Strain Fitness in Pseudomonas simiae WCS417 around PS417_27050

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_27040 and PS417_27045 are separated by 63 nucleotidesPS417_27045 and PS417_27050 are separated by 134 nucleotidesPS417_27050 and PS417_27055 are separated by 37 nucleotidesPS417_27055 and PS417_27060 are separated by 2 nucleotides PS417_27040: PS417_27040 - 3-phosphoglycerate dehydrogenase, at 5,839,290 to 5,840,519 _27040 PS417_27045: PS417_27045 - ATPase, at 5,840,583 to 5,841,023 _27045 PS417_27050: PS417_27050 - ABC transporter substrate-binding protein, at 5,841,158 to 5,841,652 _27050 PS417_27055: PS417_27055 - hypothetical protein, at 5,841,690 to 5,842,184 _27055 PS417_27060: PS417_27060 - 2OG-Fe(II) oxygenase, at 5,842,187 to 5,842,819 _27060 Position (kb) 5841 5842Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5840.233 kb on - strand, within PS417_27040at 5840.233 kb on - strand, within PS417_27040at 5840.584 kb on + strandat 5840.584 kb on + strandat 5840.588 kb on + strandat 5840.616 kb on + strandat 5840.616 kb on + strandat 5840.617 kb on - strandat 5840.910 kb on + strand, within PS417_27045at 5840.910 kb on + strand, within PS417_27045at 5840.910 kb on + strand, within PS417_27045at 5840.911 kb on - strand, within PS417_27045at 5841.104 kb on + strandat 5841.104 kb on + strandat 5841.148 kb on - strandat 5841.180 kb on + strandat 5841.180 kb on + strandat 5841.181 kb on - strandat 5841.234 kb on + strand, within PS417_27050at 5841.234 kb on + strand, within PS417_27050at 5841.234 kb on + strand, within PS417_27050at 5841.234 kb on + strand, within PS417_27050at 5841.235 kb on - strand, within PS417_27050at 5841.373 kb on + strand, within PS417_27050at 5841.376 kb on + strand, within PS417_27050at 5841.376 kb on + strand, within PS417_27050at 5841.377 kb on - strandat 5841.422 kb on + strand, within PS417_27050at 5841.423 kb on - strand, within PS417_27050at 5841.423 kb on - strand, within PS417_27050at 5841.448 kb on + strand, within PS417_27050at 5841.691 kb on + strandat 5841.692 kb on - strandat 5841.693 kb on + strandat 5842.053 kb on + strand, within PS417_27055at 5842.321 kb on - strand, within PS417_27060at 5842.321 kb on - strand, within PS417_27060at 5842.341 kb on + strand, within PS417_27060at 5842.341 kb on + strand, within PS417_27060at 5842.341 kb on + strand, within PS417_27060at 5842.341 kb on + strand, within PS417_27060at 5842.342 kb on - strand, within PS417_27060at 5842.342 kb on - strand, within PS417_27060at 5842.450 kb on - strand, within PS417_27060at 5842.552 kb on + strand, within PS417_27060at 5842.553 kb on - strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strandat 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.612 kb on + strand, within PS417_27060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
5,840,233 - PS417_27040 0.77 -2.8
5,840,233 - PS417_27040 0.77 -2.4
5,840,584 + +0.0
5,840,584 + +0.3
5,840,588 + -0.0
5,840,616 + -0.3
5,840,616 + -0.1
5,840,617 - +0.5
5,840,910 + PS417_27045 0.74 -1.6
5,840,910 + PS417_27045 0.74 -0.9
5,840,910 + PS417_27045 0.74 +0.4
5,840,911 - PS417_27045 0.74 -0.2
5,841,104 + +0.1
5,841,104 + -0.3
5,841,148 - +0.7
5,841,180 + -1.1
5,841,180 + -0.3
5,841,181 - -0.3
5,841,234 + PS417_27050 0.15 +0.8
5,841,234 + PS417_27050 0.15 +0.3
5,841,234 + PS417_27050 0.15 -0.3
5,841,234 + PS417_27050 0.15 -0.2
5,841,235 - PS417_27050 0.16 +0.1
5,841,373 + PS417_27050 0.43 +0.6
5,841,376 + PS417_27050 0.44 +0.7
5,841,376 + PS417_27050 0.44 +2.1
5,841,377 - +0.3
5,841,422 + PS417_27050 0.53 -0.1
5,841,423 - PS417_27050 0.54 -0.2
5,841,423 - PS417_27050 0.54 +1.5
5,841,448 + PS417_27050 0.59 +0.6
5,841,691 + -0.3
5,841,692 - -0.8
5,841,693 + -0.1
5,842,053 + PS417_27055 0.73 +0.2
5,842,321 - PS417_27060 0.21 +0.3
5,842,321 - PS417_27060 0.21 -0.7
5,842,341 + PS417_27060 0.24 +0.4
5,842,341 + PS417_27060 0.24 +0.7
5,842,341 + PS417_27060 0.24 -0.7
5,842,341 + PS417_27060 0.24 -0.2
5,842,342 - PS417_27060 0.24 -0.2
5,842,342 - PS417_27060 0.24 +0.3
5,842,450 - PS417_27060 0.42 -0.0
5,842,552 + PS417_27060 0.58 +0.2
5,842,553 - PS417_27060 0.58 -0.2
5,842,554 + PS417_27060 0.58 -0.5
5,842,554 + PS417_27060 0.58 -0.6
5,842,554 + PS417_27060 0.58 -0.5
5,842,554 + PS417_27060 0.58 -0.8
5,842,554 + PS417_27060 0.58 -0.3
5,842,554 + PS417_27060 0.58 -0.7
5,842,554 + PS417_27060 0.58 +0.4
5,842,554 + PS417_27060 0.58 +0.1
5,842,554 + PS417_27060 0.58 -0.5
5,842,554 + PS417_27060 0.58 +1.4
5,842,554 + PS417_27060 0.58 +0.0
5,842,554 + PS417_27060 0.58 -0.5
5,842,554 + PS417_27060 0.58 -0.4
5,842,554 + PS417_27060 0.58 -0.6
5,842,555 - PS417_27060 0.58 -0.1
5,842,555 - PS417_27060 0.58 -1.9
5,842,555 - PS417_27060 0.58 -1.5
5,842,555 - PS417_27060 0.58 +1.4
5,842,555 - PS417_27060 0.58 -0.5
5,842,555 - +2.1
5,842,555 - PS417_27060 0.58 +1.1
5,842,555 - PS417_27060 0.58 +0.0
5,842,555 - PS417_27060 0.58 -0.1
5,842,555 - PS417_27060 0.58 +0.1
5,842,555 - PS417_27060 0.58 -0.1
5,842,612 + PS417_27060 0.67 +0.7

Or see this region's nucleotide sequence