Strain Fitness in Pseudomonas simiae WCS417 around PS417_26690

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26680 and PS417_26685 are separated by 67 nucleotidesPS417_26685 and PS417_26690 overlap by 1 nucleotidesPS417_26690 and PS417_26695 are separated by 81 nucleotidesPS417_26695 and PS417_26700 are separated by 24 nucleotides PS417_26680: PS417_26680 - energy transducer TonB, at 5,768,246 to 5,769,151 _26680 PS417_26685: PS417_26685 - hypothetical protein, at 5,769,219 to 5,769,788 _26685 PS417_26690: PS417_26690 - Holliday junction resolvase, at 5,769,788 to 5,770,225 _26690 PS417_26695: PS417_26695 - uracil phosphoribosyltransferase, at 5,770,307 to 5,770,813 _26695 PS417_26700: PS417_26700 - aspartate carbamoyltransferase catalytic subunit, at 5,770,838 to 5,771,842 _26700 Position (kb) 5769 5770 5771Strain fitness (log2 ratio) -1 0 1 2 3 4at 5769.309 kb on + strand, within PS417_26685at 5769.444 kb on + strand, within PS417_26685at 5769.580 kb on + strand, within PS417_26685at 5770.213 kb on - strandat 5770.382 kb on - strand, within PS417_26695

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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5,769,309 + PS417_26685 0.16 -0.2
5,769,444 + PS417_26685 0.39 +0.5
5,769,580 + PS417_26685 0.63 -1.3
5,770,213 - +2.5
5,770,382 - PS417_26695 0.15 +3.8

Or see this region's nucleotide sequence