Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25960 and PS417_25965 are separated by 123 nucleotides PS417_25965 and PS417_25970 are separated by 90 nucleotides
PS417_25960: PS417_25960 - Acyl-CoA dehydrogenase (EC 1.3.8.7) <small>(from data)</small>, at 5,607,367 to 5,609,145
_25960
PS417_25965: PS417_25965 - acyl-CoA dehydrogenase, at 5,609,269 to 5,611,038
_25965
PS417_25970: PS417_25970 - diguanylate cyclase, at 5,611,129 to 5,612,418
_25970
Position (kb) 5609
5610
5611
5612 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9 at 5608.310 kb on - strand, within PS417_25960 at 5608.405 kb on - strand, within PS417_25960 at 5608.551 kb on + strand, within PS417_25960 at 5608.577 kb on + strand, within PS417_25960 at 5608.680 kb on - strand, within PS417_25960 at 5608.764 kb on - strand, within PS417_25960 at 5608.887 kb on - strand, within PS417_25960 at 5608.887 kb on - strand, within PS417_25960 at 5609.027 kb on - strand at 5609.115 kb on + strand at 5609.135 kb on + strand at 5609.136 kb on - strand at 5609.193 kb on + strand at 5609.346 kb on + strand at 5609.347 kb on - strand at 5609.370 kb on - strand at 5609.370 kb on - strand at 5609.453 kb on + strand, within PS417_25965 at 5609.454 kb on - strand, within PS417_25965 at 5609.454 kb on - strand, within PS417_25965 at 5609.468 kb on + strand, within PS417_25965 at 5609.477 kb on + strand, within PS417_25965 at 5609.478 kb on - strand, within PS417_25965 at 5609.478 kb on - strand, within PS417_25965 at 5609.486 kb on + strand, within PS417_25965 at 5609.486 kb on + strand, within PS417_25965 at 5609.487 kb on - strand, within PS417_25965 at 5609.594 kb on + strand, within PS417_25965 at 5609.594 kb on + strand, within PS417_25965 at 5609.594 kb on + strand, within PS417_25965 at 5609.595 kb on - strand, within PS417_25965 at 5609.595 kb on - strand, within PS417_25965 at 5609.595 kb on - strand, within PS417_25965 at 5609.684 kb on - strand, within PS417_25965 at 5609.684 kb on - strand, within PS417_25965 at 5609.684 kb on - strand, within PS417_25965 at 5609.735 kb on + strand, within PS417_25965 at 5609.735 kb on + strand, within PS417_25965 at 5609.735 kb on + strand, within PS417_25965 at 5609.735 kb on + strand, within PS417_25965 at 5609.736 kb on - strand, within PS417_25965 at 5609.736 kb on - strand, within PS417_25965 at 5609.736 kb on - strand, within PS417_25965 at 5609.736 kb on - strand, within PS417_25965 at 5609.793 kb on - strand, within PS417_25965 at 5609.793 kb on - strand, within PS417_25965 at 5609.793 kb on - strand, within PS417_25965 at 5609.960 kb on + strand, within PS417_25965 at 5609.961 kb on - strand, within PS417_25965 at 5610.104 kb on + strand, within PS417_25965 at 5610.363 kb on + strand, within PS417_25965 at 5610.364 kb on - strand, within PS417_25965 at 5610.403 kb on + strand, within PS417_25965 at 5610.404 kb on - strand, within PS417_25965 at 5610.477 kb on - strand, within PS417_25965 at 5610.662 kb on + strand, within PS417_25965 at 5610.663 kb on - strand, within PS417_25965 at 5610.663 kb on - strand, within PS417_25965 at 5610.663 kb on - strand, within PS417_25965 at 5610.663 kb on - strand, within PS417_25965 at 5610.743 kb on + strand, within PS417_25965 at 5610.744 kb on - strand, within PS417_25965 at 5610.785 kb on + strand, within PS417_25965 at 5610.820 kb on - strand, within PS417_25965 at 5610.820 kb on - strand, within PS417_25965 at 5611.102 kb on + strand at 5611.103 kb on - strand at 5611.218 kb on - strand at 5611.239 kb on + strand at 5611.392 kb on - strand, within PS417_25970 at 5611.619 kb on + strand, within PS417_25970 at 5611.619 kb on + strand, within PS417_25970 at 5611.619 kb on + strand, within PS417_25970 at 5611.619 kb on + strand, within PS417_25970 at 5611.619 kb on + strand, within PS417_25970 at 5611.619 kb on + strand, within PS417_25970 at 5611.620 kb on - strand, within PS417_25970 at 5611.620 kb on - strand, within PS417_25970 at 5611.620 kb on - strand, within PS417_25970
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 5,608,310 - PS417_25960 0.53 -0.1 5,608,405 - PS417_25960 0.58 -0.4 5,608,551 + PS417_25960 0.67 -0.1 5,608,577 + PS417_25960 0.68 +0.4 5,608,680 - PS417_25960 0.74 -0.3 5,608,764 - PS417_25960 0.79 +0.0 5,608,887 - PS417_25960 0.85 +0.1 5,608,887 - PS417_25960 0.85 +0.5 5,609,027 - -1.0 5,609,115 + -0.1 5,609,135 + -0.2 5,609,136 - -0.8 5,609,193 + +0.1 5,609,346 + +2.0 5,609,347 - +0.9 5,609,370 - +0.8 5,609,370 - -0.3 5,609,453 + PS417_25965 0.10 +0.3 5,609,454 - PS417_25965 0.10 -0.7 5,609,454 - PS417_25965 0.10 +0.4 5,609,468 + PS417_25965 0.11 -0.4 5,609,477 + PS417_25965 0.12 -0.3 5,609,478 - PS417_25965 0.12 +0.3 5,609,478 - PS417_25965 0.12 -1.0 5,609,486 + PS417_25965 0.12 +0.1 5,609,486 + PS417_25965 0.12 -0.1 5,609,487 - PS417_25965 0.12 +0.7 5,609,594 + PS417_25965 0.18 -0.5 5,609,594 + PS417_25965 0.18 +0.0 5,609,594 + PS417_25965 0.18 -0.3 5,609,595 - PS417_25965 0.18 +1.2 5,609,595 - PS417_25965 0.18 +0.2 5,609,595 - PS417_25965 0.18 +0.1 5,609,684 - PS417_25965 0.23 -0.3 5,609,684 - PS417_25965 0.23 +0.6 5,609,684 - PS417_25965 0.23 +1.0 5,609,735 + PS417_25965 0.26 -1.0 5,609,735 + PS417_25965 0.26 -0.0 5,609,735 + PS417_25965 0.26 +0.3 5,609,735 + PS417_25965 0.26 -0.8 5,609,736 - PS417_25965 0.26 +0.7 5,609,736 - PS417_25965 0.26 -0.1 5,609,736 - PS417_25965 0.26 +2.6 5,609,736 - PS417_25965 0.26 +0.3 5,609,793 - PS417_25965 0.30 -0.1 5,609,793 - PS417_25965 0.30 +1.0 5,609,793 - PS417_25965 0.30 -0.2 5,609,960 + PS417_25965 0.39 -0.4 5,609,961 - PS417_25965 0.39 +0.2 5,610,104 + PS417_25965 0.47 -0.7 5,610,363 + PS417_25965 0.62 -1.7 5,610,364 - PS417_25965 0.62 +1.4 5,610,403 + PS417_25965 0.64 -0.7 5,610,404 - PS417_25965 0.64 +0.3 5,610,477 - PS417_25965 0.68 +0.3 5,610,662 + PS417_25965 0.79 +1.0 5,610,663 - PS417_25965 0.79 +0.1 5,610,663 - PS417_25965 0.79 +0.5 5,610,663 - PS417_25965 0.79 +0.0 5,610,663 - PS417_25965 0.79 +1.2 5,610,743 + PS417_25965 0.83 +0.9 5,610,744 - PS417_25965 0.83 +0.4 5,610,785 + PS417_25965 0.86 +9.0 5,610,820 - PS417_25965 0.88 +0.6 5,610,820 - PS417_25965 0.88 -0.6 5,611,102 + +0.4 5,611,103 - +0.1 5,611,218 - +0.2 5,611,239 + +0.1 5,611,392 - PS417_25970 0.20 +0.2 5,611,619 + PS417_25970 0.38 +0.4 5,611,619 + PS417_25970 0.38 -0.0 5,611,619 + PS417_25970 0.38 -0.1 5,611,619 + PS417_25970 0.38 -0.3 5,611,619 + PS417_25970 0.38 +0.3 5,611,619 + PS417_25970 0.38 +2.0 5,611,620 - PS417_25970 0.38 +0.1 5,611,620 - PS417_25970 0.38 -0.4 5,611,620 - PS417_25970 0.38 +1.2
Or see this region's nucleotide sequence