Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00230 and PS417_00235 are separated by 86 nucleotides PS417_00235 and PS417_00240 overlap by 4 nucleotides PS417_00240 and PS417_00245 are separated by 102 nucleotides
PS417_00230: PS417_00230 - aminopeptidase, at 44,748 to 45,791
_00230
PS417_00235: PS417_00235 - HAD family hydrolase, at 45,878 to 46,537
_00235
PS417_00240: PS417_00240 - anhydrase, at 46,534 to 47,076
_00240
PS417_00245: PS417_00245 - oligopeptidase A, at 47,179 to 49,230
_00245
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 44.991 kb on + strand, within PS417_00230 at 45.013 kb on - strand, within PS417_00230 at 45.108 kb on + strand, within PS417_00230 at 45.109 kb on - strand, within PS417_00230 at 45.109 kb on - strand, within PS417_00230 at 45.173 kb on - strand, within PS417_00230 at 45.189 kb on + strand, within PS417_00230 at 45.190 kb on - strand, within PS417_00230 at 45.297 kb on + strand, within PS417_00230 at 45.297 kb on + strand, within PS417_00230 at 45.298 kb on - strand, within PS417_00230 at 45.298 kb on - strand, within PS417_00230 at 45.395 kb on + strand, within PS417_00230 at 45.395 kb on + strand, within PS417_00230 at 45.586 kb on - strand, within PS417_00230 at 45.642 kb on + strand, within PS417_00230 at 45.642 kb on + strand, within PS417_00230 at 45.643 kb on - strand, within PS417_00230 at 45.643 kb on - strand, within PS417_00230 at 45.875 kb on - strand at 45.892 kb on + strand at 46.137 kb on + strand, within PS417_00235 at 46.137 kb on + strand, within PS417_00235 at 46.218 kb on + strand, within PS417_00235 at 46.218 kb on + strand, within PS417_00235 at 46.218 kb on + strand, within PS417_00235 at 46.219 kb on - strand, within PS417_00235 at 46.288 kb on - strand, within PS417_00235 at 46.360 kb on - strand, within PS417_00235 at 46.468 kb on + strand, within PS417_00235 at 46.580 kb on + strand at 46.595 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.655 kb on - strand, within PS417_00240 at 46.655 kb on - strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 47.079 kb on + strand at 47.102 kb on - strand at 47.102 kb on - strand at 47.123 kb on + strand at 47.124 kb on - strand at 47.128 kb on - strand at 47.128 kb on - strand at 47.150 kb on + strand at 47.154 kb on + strand at 47.154 kb on + strand at 47.155 kb on - strand at 47.155 kb on - strand at 47.210 kb on - strand at 47.210 kb on - strand at 47.444 kb on - strand, within PS417_00245 at 47.473 kb on + strand, within PS417_00245 at 47.474 kb on - strand, within PS417_00245
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 44,991 + PS417_00230 0.23 -1.1 45,013 - PS417_00230 0.25 -0.3 45,108 + PS417_00230 0.34 +0.4 45,109 - PS417_00230 0.35 +0.6 45,109 - PS417_00230 0.35 -0.0 45,173 - PS417_00230 0.41 +0.4 45,189 + PS417_00230 0.42 -0.4 45,190 - PS417_00230 0.42 -0.1 45,297 + PS417_00230 0.53 -1.3 45,297 + PS417_00230 0.53 +0.4 45,298 - PS417_00230 0.53 -0.3 45,298 - PS417_00230 0.53 -0.0 45,395 + PS417_00230 0.62 -0.7 45,395 + PS417_00230 0.62 +0.4 45,586 - PS417_00230 0.80 +0.5 45,642 + PS417_00230 0.86 -0.6 45,642 + PS417_00230 0.86 -1.6 45,643 - PS417_00230 0.86 +1.2 45,643 - PS417_00230 0.86 +0.9 45,875 - +0.5 45,892 + -0.4 46,137 + PS417_00235 0.39 -0.3 46,137 + PS417_00235 0.39 -0.0 46,218 + PS417_00235 0.52 -0.2 46,218 + PS417_00235 0.52 -0.4 46,218 + PS417_00235 0.52 -0.2 46,219 - PS417_00235 0.52 -0.2 46,288 - PS417_00235 0.62 -1.0 46,360 - PS417_00235 0.73 -0.0 46,468 + PS417_00235 0.89 +0.0 46,580 + +0.4 46,595 + PS417_00240 0.11 +1.1 46,654 + PS417_00240 0.22 +1.2 46,654 + PS417_00240 0.22 +0.3 46,654 + PS417_00240 0.22 +0.2 46,654 + PS417_00240 0.22 +0.8 46,654 + PS417_00240 0.22 -0.5 46,655 - PS417_00240 0.22 -0.2 46,655 - PS417_00240 0.22 -0.1 46,658 + PS417_00240 0.23 +0.5 46,658 + PS417_00240 0.23 -0.2 46,658 + PS417_00240 0.23 +0.6 46,658 + PS417_00240 0.23 +0.3 46,658 + PS417_00240 0.23 +7.3 46,658 + PS417_00240 0.23 +0.6 46,659 - PS417_00240 0.23 +0.3 46,659 - PS417_00240 0.23 -0.2 46,659 - PS417_00240 0.23 -0.3 46,659 - PS417_00240 0.23 -0.2 46,659 - PS417_00240 0.23 -0.3 46,659 - PS417_00240 0.23 -1.2 46,659 - PS417_00240 0.23 -0.1 46,659 - PS417_00240 0.23 -1.9 46,659 - PS417_00240 0.23 -2.9 46,659 - PS417_00240 0.23 +0.4 46,659 - PS417_00240 0.23 +0.5 47,079 + +1.1 47,102 - -0.3 47,102 - -0.3 47,123 + -0.5 47,124 - -1.7 47,128 - -0.2 47,128 - -0.5 47,150 + +0.4 47,154 + +0.7 47,154 + -0.4 47,155 - -1.7 47,155 - -0.9 47,210 - -1.4 47,210 - -0.1 47,444 - PS417_00245 0.13 +1.2 47,473 + PS417_00245 0.14 +0.5 47,474 - PS417_00245 0.14 -0.4
Or see this region's nucleotide sequence