Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4476

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4474 and Echvi_4475 are separated by 2 nucleotidesEchvi_4475 and Echvi_4476 are separated by 513 nucleotidesEchvi_4476 and Echvi_4477 are separated by 102 nucleotides Echvi_4474: Echvi_4474 - hypothetical protein, at 5,350,589 to 5,351,140 _4474 Echvi_4475: Echvi_4475 - Divergent AAA domain., at 5,351,143 to 5,351,532 _4475 Echvi_4476: Echvi_4476 - Nitrogen regulatory protein PII, at 5,352,046 to 5,352,387 _4476 Echvi_4477: Echvi_4477 - RND family efflux transporter, MFP subunit, at 5,352,490 to 5,353,713 _4477 Position (kb) 5352 5353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5351.050 kb on + strand, within Echvi_4474at 5351.119 kb on + strandat 5351.119 kb on + strandat 5351.123 kb on - strandat 5351.123 kb on - strandat 5351.188 kb on + strand, within Echvi_4475at 5351.190 kb on + strand, within Echvi_4475at 5351.190 kb on + strand, within Echvi_4475at 5351.217 kb on + strand, within Echvi_4475at 5351.223 kb on + strand, within Echvi_4475at 5351.223 kb on + strand, within Echvi_4475at 5351.256 kb on - strand, within Echvi_4475at 5351.256 kb on - strand, within Echvi_4475at 5351.256 kb on - strand, within Echvi_4475at 5351.277 kb on + strand, within Echvi_4475at 5351.277 kb on + strand, within Echvi_4475at 5351.315 kb on + strand, within Echvi_4475at 5351.329 kb on + strand, within Echvi_4475at 5351.342 kb on + strand, within Echvi_4475at 5351.343 kb on - strand, within Echvi_4475at 5351.377 kb on + strand, within Echvi_4475at 5351.377 kb on + strand, within Echvi_4475at 5351.377 kb on + strand, within Echvi_4475at 5351.378 kb on - strand, within Echvi_4475at 5351.378 kb on - strand, within Echvi_4475at 5351.378 kb on - strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.380 kb on - strand, within Echvi_4475at 5351.380 kb on - strand, within Echvi_4475at 5351.380 kb on - strand, within Echvi_4475at 5351.382 kb on - strand, within Echvi_4475at 5351.497 kb on - strandat 5351.596 kb on - strandat 5351.596 kb on - strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.652 kb on - strandat 5351.652 kb on - strandat 5351.659 kb on - strandat 5351.659 kb on - strandat 5351.664 kb on + strandat 5351.717 kb on + strandat 5351.718 kb on - strandat 5351.718 kb on - strandat 5351.787 kb on - strandat 5351.787 kb on - strandat 5351.790 kb on + strandat 5351.791 kb on - strandat 5351.809 kb on + strandat 5351.809 kb on + strandat 5351.809 kb on + strandat 5351.810 kb on - strandat 5351.819 kb on + strandat 5351.820 kb on - strandat 5351.867 kb on - strandat 5351.874 kb on - strandat 5351.874 kb on - strandat 5351.874 kb on - strandat 5351.971 kb on + strandat 5351.973 kb on + strandat 5351.973 kb on + strandat 5351.973 kb on + strandat 5351.974 kb on - strandat 5351.974 kb on - strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5352.032 kb on - strandat 5352.043 kb on + strandat 5352.044 kb on - strandat 5352.048 kb on - strandat 5352.055 kb on - strandat 5352.085 kb on + strand, within Echvi_4476at 5352.086 kb on - strand, within Echvi_4476at 5352.093 kb on - strand, within Echvi_4476at 5352.116 kb on + strand, within Echvi_4476at 5352.117 kb on - strand, within Echvi_4476at 5352.117 kb on - strand, within Echvi_4476at 5352.214 kb on + strand, within Echvi_4476at 5352.214 kb on + strand, within Echvi_4476at 5352.215 kb on - strand, within Echvi_4476at 5352.231 kb on + strand, within Echvi_4476at 5352.232 kb on - strand, within Echvi_4476at 5352.270 kb on + strand, within Echvi_4476at 5352.303 kb on + strand, within Echvi_4476at 5352.303 kb on + strand, within Echvi_4476at 5352.304 kb on - strand, within Echvi_4476at 5352.413 kb on + strandat 5352.537 kb on - strandat 5352.539 kb on + strandat 5352.539 kb on + strandat 5352.539 kb on + strandat 5352.539 kb on + strandat 5352.540 kb on - strandat 5352.618 kb on + strand, within Echvi_4477at 5352.687 kb on + strand, within Echvi_4477at 5352.734 kb on - strand, within Echvi_4477at 5352.743 kb on - strand, within Echvi_4477at 5352.763 kb on + strand, within Echvi_4477at 5352.763 kb on + strand, within Echvi_4477at 5352.763 kb on + strand, within Echvi_4477at 5352.780 kb on - strand, within Echvi_4477at 5352.780 kb on - strand, within Echvi_4477at 5352.826 kb on + strand, within Echvi_4477at 5352.826 kb on + strand, within Echvi_4477at 5352.826 kb on + strand, within Echvi_4477at 5352.826 kb on + strand, within Echvi_4477at 5352.827 kb on - strand, within Echvi_4477at 5352.827 kb on - strandat 5352.970 kb on + strand, within Echvi_4477at 5352.991 kb on + strand, within Echvi_4477at 5352.992 kb on - strand, within Echvi_4477at 5352.992 kb on - strand, within Echvi_4477at 5352.992 kb on - strand, within Echvi_4477at 5352.992 kb on - strand, within Echvi_4477at 5353.031 kb on + strand, within Echvi_4477at 5353.032 kb on - strand, within Echvi_4477at 5353.032 kb on - strand, within Echvi_4477at 5353.095 kb on - strand, within Echvi_4477at 5353.100 kb on + strand, within Echvi_4477at 5353.100 kb on + strand, within Echvi_4477at 5353.100 kb on + strand, within Echvi_4477at 5353.101 kb on - strand, within Echvi_4477at 5353.148 kb on - strand, within Echvi_4477at 5353.160 kb on + strand, within Echvi_4477at 5353.190 kb on + strand, within Echvi_4477at 5353.191 kb on - strand, within Echvi_4477at 5353.229 kb on - strand, within Echvi_4477at 5353.229 kb on - strand, within Echvi_4477at 5353.241 kb on + strand, within Echvi_4477at 5353.277 kb on + strand, within Echvi_4477at 5353.290 kb on + strand, within Echvi_4477at 5353.292 kb on + strand, within Echvi_4477at 5353.293 kb on - strand, within Echvi_4477at 5353.300 kb on + strand, within Echvi_4477at 5353.300 kb on + strandat 5353.305 kb on - strand, within Echvi_4477at 5353.309 kb on - strand, within Echvi_4477at 5353.343 kb on + strand, within Echvi_4477at 5353.382 kb on - strand, within Echvi_4477

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
5,351,050 + Echvi_4474 0.84 -0.1
5,351,119 + -1.3
5,351,119 + -0.5
5,351,123 - -1.8
5,351,123 - -0.5
5,351,188 + Echvi_4475 0.12 +0.1
5,351,190 + Echvi_4475 0.12 -0.5
5,351,190 + Echvi_4475 0.12 -0.6
5,351,217 + Echvi_4475 0.19 +0.6
5,351,223 + Echvi_4475 0.21 -0.2
5,351,223 + Echvi_4475 0.21 +0.0
5,351,256 - Echvi_4475 0.29 -0.7
5,351,256 - Echvi_4475 0.29 -0.5
5,351,256 - Echvi_4475 0.29 +0.2
5,351,277 + Echvi_4475 0.34 +0.9
5,351,277 + Echvi_4475 0.34 -0.7
5,351,315 + Echvi_4475 0.44 +2.8
5,351,329 + Echvi_4475 0.48 +0.1
5,351,342 + Echvi_4475 0.51 +1.5
5,351,343 - Echvi_4475 0.51 -0.6
5,351,377 + Echvi_4475 0.60 -0.2
5,351,377 + Echvi_4475 0.60 +1.1
5,351,377 + Echvi_4475 0.60 +0.6
5,351,378 - Echvi_4475 0.60 -0.4
5,351,378 - Echvi_4475 0.60 -1.5
5,351,378 - Echvi_4475 0.60 +1.1
5,351,379 + Echvi_4475 0.61 -0.9
5,351,379 + Echvi_4475 0.61 +0.1
5,351,379 + Echvi_4475 0.61 +0.6
5,351,379 + Echvi_4475 0.61 -1.2
5,351,379 + Echvi_4475 0.61 -0.1
5,351,379 + Echvi_4475 0.61 -0.1
5,351,380 - Echvi_4475 0.61 +0.5
5,351,380 - Echvi_4475 0.61 -2.2
5,351,380 - Echvi_4475 0.61 +0.8
5,351,382 - Echvi_4475 0.61 -0.8
5,351,497 - -0.3
5,351,596 - -1.1
5,351,596 - -1.1
5,351,651 + +2.6
5,351,651 + +1.3
5,351,651 + -1.2
5,351,651 + +0.1
5,351,651 + -0.2
5,351,651 + -0.8
5,351,652 - +1.2
5,351,652 - -0.8
5,351,659 - +2.8
5,351,659 - -0.4
5,351,664 + +0.1
5,351,717 + -1.0
5,351,718 - -1.0
5,351,718 - -1.5
5,351,787 - -0.1
5,351,787 - -1.1
5,351,790 + +1.4
5,351,791 - +0.8
5,351,809 + -0.7
5,351,809 + +0.2
5,351,809 + -1.0
5,351,810 - -0.5
5,351,819 + -0.4
5,351,820 - -2.6
5,351,867 - -1.3
5,351,874 - +0.8
5,351,874 - -1.6
5,351,874 - -2.1
5,351,971 + +0.2
5,351,973 + -1.0
5,351,973 + +0.3
5,351,973 + +0.1
5,351,974 - -0.7
5,351,974 - +0.2
5,351,975 + +0.2
5,351,975 + -0.1
5,351,975 + -0.0
5,351,975 + -1.3
5,351,975 + +0.4
5,351,975 + +0.3
5,352,032 - -1.0
5,352,043 + -0.7
5,352,044 - -0.4
5,352,048 - +1.1
5,352,055 - -0.8
5,352,085 + Echvi_4476 0.11 -0.8
5,352,086 - Echvi_4476 0.12 -1.2
5,352,093 - Echvi_4476 0.14 -3.5
5,352,116 + Echvi_4476 0.20 -1.0
5,352,117 - Echvi_4476 0.21 -0.9
5,352,117 - Echvi_4476 0.21 -1.1
5,352,214 + Echvi_4476 0.49 -0.0
5,352,214 + Echvi_4476 0.49 -0.8
5,352,215 - Echvi_4476 0.49 +0.6
5,352,231 + Echvi_4476 0.54 -1.7
5,352,232 - Echvi_4476 0.54 -1.0
5,352,270 + Echvi_4476 0.65 -1.3
5,352,303 + Echvi_4476 0.75 -0.2
5,352,303 + Echvi_4476 0.75 +0.1
5,352,304 - Echvi_4476 0.75 -1.5
5,352,413 + +0.4
5,352,537 - +0.8
5,352,539 + -0.8
5,352,539 + +1.4
5,352,539 + +1.2
5,352,539 + -0.2
5,352,540 - -1.7
5,352,618 + Echvi_4477 0.10 -0.8
5,352,687 + Echvi_4477 0.16 +2.2
5,352,734 - Echvi_4477 0.20 -1.4
5,352,743 - Echvi_4477 0.21 -1.4
5,352,763 + Echvi_4477 0.22 +1.3
5,352,763 + Echvi_4477 0.22 -2.2
5,352,763 + Echvi_4477 0.22 -0.3
5,352,780 - Echvi_4477 0.24 -0.4
5,352,780 - Echvi_4477 0.24 +1.1
5,352,826 + Echvi_4477 0.27 +0.8
5,352,826 + Echvi_4477 0.27 -0.4
5,352,826 + Echvi_4477 0.27 +0.4
5,352,826 + Echvi_4477 0.27 +0.3
5,352,827 - Echvi_4477 0.28 -2.7
5,352,827 - +2.4
5,352,970 + Echvi_4477 0.39 +1.2
5,352,991 + Echvi_4477 0.41 +0.1
5,352,992 - Echvi_4477 0.41 -0.8
5,352,992 - Echvi_4477 0.41 -0.7
5,352,992 - Echvi_4477 0.41 +0.6
5,352,992 - Echvi_4477 0.41 -1.5
5,353,031 + Echvi_4477 0.44 -0.7
5,353,032 - Echvi_4477 0.44 +0.0
5,353,032 - Echvi_4477 0.44 -0.6
5,353,095 - Echvi_4477 0.49 -0.1
5,353,100 + Echvi_4477 0.50 -1.5
5,353,100 + Echvi_4477 0.50 +0.4
5,353,100 + Echvi_4477 0.50 +1.1
5,353,101 - Echvi_4477 0.50 -0.9
5,353,148 - Echvi_4477 0.54 +0.1
5,353,160 + Echvi_4477 0.55 +0.9
5,353,190 + Echvi_4477 0.57 +0.1
5,353,191 - Echvi_4477 0.57 -0.8
5,353,229 - Echvi_4477 0.60 -1.0
5,353,229 - Echvi_4477 0.60 -1.6
5,353,241 + Echvi_4477 0.61 -0.7
5,353,277 + Echvi_4477 0.64 +1.3
5,353,290 + Echvi_4477 0.65 -1.0
5,353,292 + Echvi_4477 0.66 +0.4
5,353,293 - Echvi_4477 0.66 -0.3
5,353,300 + Echvi_4477 0.66 +0.0
5,353,300 + +2.4
5,353,305 - Echvi_4477 0.67 +0.8
5,353,309 - Echvi_4477 0.67 +2.5
5,353,343 + Echvi_4477 0.70 +0.2
5,353,382 - Echvi_4477 0.73 -1.9

Or see this region's nucleotide sequence