Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3202

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,797,831	+		Echvi_3200	0.37	+0.8
3,797,831	+		Echvi_3200	0.37	-0.1
3,797,831	+		Echvi_3200	0.37	+1.3
3,797,832	-		Echvi_3200	0.38	+0.1
3,797,852	+		Echvi_3200	0.40	+0.3
3,797,896	+		Echvi_3200	0.47	-0.2
3,797,897	-		Echvi_3200	0.47	+0.3
3,798,052	+		Echvi_3200	0.70	+0.8
3,798,117	+		Echvi_3200	0.79	+0.5
3,798,153	-		Echvi_3200	0.84	+0.4
3,798,201	+				+2.2
3,798,216	+				-0.4
3,798,313	-				-0.0
3,798,316	+				+0.3
3,798,353	+		Echvi_3201	0.11	-1.4
3,798,354	-		Echvi_3201	0.11	+0.8
3,798,358	-		Echvi_3201	0.12	-0.8
3,798,389	+		Echvi_3201	0.21	+0.2
3,798,396	+		Echvi_3201	0.23	-1.0
3,798,408	+		Echvi_3201	0.27	-0.5
3,798,409	-		Echvi_3201	0.27	+0.1
3,798,532	+		Echvi_3201	0.62	-1.1
3,798,550	+		Echvi_3201	0.67	+0.2
3,798,550	+		Echvi_3201	0.67	-0.1
3,798,550	+		Echvi_3201	0.67	+0.1
3,798,551	-		Echvi_3201	0.68	-0.2
3,798,551	-		Echvi_3201	0.68	-1.4
3,798,551	-		Echvi_3201	0.68	+0.3
3,798,551	-		Echvi_3201	0.68	-0.8
3,798,591	+		Echvi_3201	0.79	+0.0
3,798,591	+		Echvi_3201	0.79	+0.4
3,798,615	+		Echvi_3201	0.86	-1.1
3,798,629	-				-0.8
3,798,689	+				+0.1
3,798,697	-				+0.8
3,798,740	+				-1.9
3,798,807	+				-1.3
3,798,817	+				+0.2
3,798,817	+				+0.3
3,798,818	-				-1.7
3,798,825	+				-2.1
3,798,825	+				+0.2
3,798,826	-				+1.0
3,798,862	+				+1.8
3,798,862	+				-0.1
3,798,863	-				-0.2
3,798,863	-				-2.0
3,798,865	-				-0.8
3,798,954	-				-1.1
3,799,054	+				-0.8
3,799,055	-				+0.3
3,799,177	+		Echvi_3202	0.12	-0.8
3,799,178	-		Echvi_3202	0.12	+0.0
3,799,178	-		Echvi_3202	0.12	-0.5
3,799,187	+		Echvi_3202	0.12	+1.1
3,799,187	+		Echvi_3202	0.12	-0.5
3,799,188	-		Echvi_3202	0.12	-0.2
3,799,256	+		Echvi_3202	0.14	-1.0
3,799,257	-		Echvi_3202	0.14	-2.5
3,799,257	-		Echvi_3202	0.14	-0.3
3,799,258	+		Echvi_3202	0.14	-1.4
3,799,339	+		Echvi_3202	0.16	-2.6
3,799,339	+		Echvi_3202	0.16	+0.7
3,799,340	-		Echvi_3202	0.16	-0.8
3,799,342	+		Echvi_3202	0.16	+0.2
3,799,342	+		Echvi_3202	0.16	-0.4
3,799,345	+		Echvi_3202	0.17	-0.7
3,799,345	+		Echvi_3202	0.17	-1.1
3,799,345	+		Echvi_3202	0.17	+1.0
3,799,346	-		Echvi_3202	0.17	-0.8
3,799,364	+		Echvi_3202	0.17	-1.3
3,799,364	+		Echvi_3202	0.17	+1.4
3,799,365	-		Echvi_3202	0.17	-1.1
3,799,365	-		Echvi_3202	0.17	-0.9
3,799,365	-		Echvi_3202	0.17	+1.8
3,799,365	-		Echvi_3202	0.17	-0.6
3,799,411	+		Echvi_3202	0.18	-0.1
3,799,411	+		Echvi_3202	0.18	-1.3
3,799,411	+		Echvi_3202	0.18	-0.4
3,799,444	+		Echvi_3202	0.19	-1.7
3,799,626	+		Echvi_3202	0.25	-0.5
3,799,626	+		Echvi_3202	0.25	-0.2
3,799,799	-		Echvi_3202	0.30	+0.6
3,799,828	+		Echvi_3202	0.31	-0.1
3,799,830	+		Echvi_3202	0.31	-0.2
3,799,830	+		Echvi_3202	0.31	-0.6
3,799,830	+		Echvi_3202	0.31	-0.1
3,799,831	-		Echvi_3202	0.31	+0.4
3,799,868	-		Echvi_3202	0.32	+0.0
3,799,903	-		Echvi_3202	0.33	+1.5
3,799,905	+		Echvi_3202	0.33	+0.0
3,800,075	-		Echvi_3202	0.38	-1.1
3,800,305	-		Echvi_3202	0.44	-0.1
3,800,376	-		Echvi_3202	0.46	-1.6
3,800,438	-		Echvi_3202	0.48	-0.9
3,800,443	+		Echvi_3202	0.48	-0.5
3,800,443	+		Echvi_3202	0.48	+0.4
3,800,443	+		Echvi_3202	0.48	-1.1
3,800,454	-		Echvi_3202	0.49	-0.2
3,800,517	-		Echvi_3202	0.50	-0.2
3,800,517	-		Echvi_3202	0.50	+0.2
3,800,564	+		Echvi_3202	0.52	+0.4
3,800,564	+		Echvi_3202	0.52	-0.8
3,800,564	+		Echvi_3202	0.52	-0.8
3,800,575	+		Echvi_3202	0.52	+1.2
3,800,575	+		Echvi_3202	0.52	+0.2
3,800,585	-				+1.8
3,800,610	+				-0.8
3,800,615	+				-0.1
3,800,616	-				-0.4
3,800,738	+				-1.2
3,800,823	-				-1.4
3,800,823	-				+0.3
3,800,857	+				+0.1
3,800,858	-				-0.4
3,800,876	-				+0.4
3,800,876	-				+0.2
3,800,879	+				-0.9
3,800,879	+				-1.2
3,800,879	+				-0.9
3,800,879	+				-1.0
3,800,879	+				-0.4
3,800,880	-				+0.2
3,800,880	-				+0.5
3,800,880	-				-0.2
3,800,880	-				+1.9
3,801,041	+				+0.2
3,801,151	+				-0.7
3,801,239	+				+0.6
3,801,261	-				+1.6
3,801,284	+				-0.7
3,801,285	-				+0.4
3,801,285	-				+1.8
3,801,292	-				-0.1
3,801,292	-				-2.0
3,801,297	+				-0.5
3,801,306	-				-1.0
3,801,306	-				-0.2
3,801,306	-				+0.3
3,801,417	-				-1.2
3,801,506	+				+0.7
3,801,506	+				-0.6
3,801,507	-				+1.8
3,801,507	-				+0.1
3,801,507	-				-0.1
3,801,507	-				+0.1
3,801,518	-				+0.4
3,801,551	+				-0.4
3,801,551	+				+0.5
3,801,552	-				-0.1
3,801,552	-				-0.7
3,801,552	-				+0.1
3,801,597	-				-1.8
3,801,597	-				+1.0
3,801,640	+				-1.4
3,801,664	+				-0.4
3,801,664	+				+1.5
3,801,665	-				+0.6
3,801,674	+				-0.5
3,801,691	-				-0.7
3,801,719	-				+0.1
3,801,719	-				-1.5
3,801,719	-				-0.5
3,801,750	-				+0.2
3,801,858	+				+0.8
3,801,858	+				+0.1
3,801,880	+				+0.3
3,801,884	+				+0.2
3,801,885	-				+0.2
3,801,889	+				-0.2
3,801,890	-				+0.1
3,801,890	-				-0.2
3,801,983	+				-0.6
3,801,983	+				+0.5
3,801,984	-				+0.5
3,801,984	-				-0.6
3,802,019	-				+0.0
3,802,033	-				+0.2
3,802,039	+				+0.3
3,802,197	+				-0.9
3,802,222	-				-0.2
3,802,253	+				+0.3
3,802,283	-				+0.4
3,802,333	+		Echvi_3204	0.14	-1.8
3,802,333	+		Echvi_3204	0.14	-1.0
3,802,333	+		Echvi_3204	0.14	+2.4
3,802,334	-		Echvi_3204	0.14	+0.3
3,802,338	+		Echvi_3204	0.15	-0.0
3,802,339	-		Echvi_3204	0.15	-0.1
3,802,340	+		Echvi_3204	0.15	-0.6
3,802,341	-		Echvi_3204	0.15	-2.0
3,802,341	-		Echvi_3204	0.15	+1.0
3,802,341	-		Echvi_3204	0.15	-1.4
3,802,341	-		Echvi_3204	0.15	-0.6
3,802,341	-		Echvi_3204	0.15	-0.8
3,802,416	-		Echvi_3204	0.28	-1.6
3,802,416	-		Echvi_3204	0.28	+0.7
3,802,486	-		Echvi_3204	0.40	-0.0
3,802,486	-		Echvi_3204	0.40	+2.4
3,802,496	+		Echvi_3204	0.42	-1.3
3,802,497	-		Echvi_3204	0.42	+0.8
3,802,497	-		Echvi_3204	0.42	+0.1
3,802,550	-		Echvi_3204	0.51	+0.0
3,802,643	+		Echvi_3204	0.67	-2.6
3,802,653	+		Echvi_3204	0.69	+1.3
3,802,813	+				-0.4
3,802,898	+				-0.2
3,802,908	+		Echvi_3205	0.11	-1.1
3,803,064	+		Echvi_3205	0.32	+0.0
3,803,065	-		Echvi_3205	0.32	-0.2
3,803,065	-		Echvi_3205	0.32	+1.1
3,803,065	-		Echvi_3205	0.32	+0.2
3,803,065	-		Echvi_3205	0.32	-0.6