Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0848 and Echvi_0849 are separated by 3 nucleotides Echvi_0849 and Echvi_0850 overlap by 1 nucleotides Echvi_0850 and Echvi_0851 are separated by 12 nucleotides Echvi_0851 and Echvi_0852 are separated by 107 nucleotides
Echvi_0848: Echvi_0848 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 971,162 to 971,950
_0848
Echvi_0849: Echvi_0849 - probable S-adenosylmethionine-dependent methyltransferase, YraL family, at 971,954 to 972,640
_0849
Echvi_0850: Echvi_0850 - Pterin-4a-carbinolamine dehydratase, at 972,640 to 972,870
_0850
Echvi_0851: Echvi_0851 - Uncharacterized conserved protein, at 972,883 to 973,152
_0851
Echvi_0852: Echvi_0852 - Parvulin-like peptidyl-prolyl isomerase, at 973,260 to 975,368
_0852
Position (kb) 972
973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 971.931 kb on - strand at 971.956 kb on - strand at 971.975 kb on - strand at 971.979 kb on - strand at 971.998 kb on + strand at 971.999 kb on - strand at 971.999 kb on - strand at 972.007 kb on + strand at 972.008 kb on - strand at 972.009 kb on + strand at 972.009 kb on + strand at 972.009 kb on + strand at 972.009 kb on + strand at 972.012 kb on + strand at 972.012 kb on + strand at 972.054 kb on + strand, within Echvi_0849 at 972.338 kb on + strand, within Echvi_0849 at 972.344 kb on + strand, within Echvi_0849 at 972.434 kb on + strand, within Echvi_0849 at 972.457 kb on + strand, within Echvi_0849 at 972.457 kb on + strand, within Echvi_0849 at 972.462 kb on + strand, within Echvi_0849 at 972.463 kb on - strand, within Echvi_0849 at 972.560 kb on + strand, within Echvi_0849 at 972.560 kb on + strand, within Echvi_0849 at 972.574 kb on + strand at 972.577 kb on + strand at 972.641 kb on + strand at 972.641 kb on + strand at 972.642 kb on - strand at 972.642 kb on - strand at 972.693 kb on + strand, within Echvi_0850 at 972.835 kb on + strand, within Echvi_0850 at 972.843 kb on + strand, within Echvi_0850 at 972.844 kb on - strand, within Echvi_0850 at 972.844 kb on - strand, within Echvi_0850 at 972.923 kb on + strand, within Echvi_0851 at 972.924 kb on - strand, within Echvi_0851 at 972.925 kb on + strand, within Echvi_0851 at 972.925 kb on + strand, within Echvi_0851 at 972.926 kb on - strand, within Echvi_0851 at 972.926 kb on - strand, within Echvi_0851 at 972.980 kb on + strand, within Echvi_0851 at 972.980 kb on + strand, within Echvi_0851 at 973.079 kb on + strand, within Echvi_0851 at 973.079 kb on + strand, within Echvi_0851 at 973.080 kb on - strand, within Echvi_0851 at 973.131 kb on + strand at 973.134 kb on + strand at 973.156 kb on - strand at 973.156 kb on - strand at 973.156 kb on - strand at 973.166 kb on - strand at 973.202 kb on - strand at 973.258 kb on + strand at 973.258 kb on + strand at 973.258 kb on + strand at 973.259 kb on - strand at 973.259 kb on - strand at 973.261 kb on + strand at 973.272 kb on - strand at 973.272 kb on - strand at 973.273 kb on + strand at 973.279 kb on + strand at 973.279 kb on + strand at 973.279 kb on + strand at 973.279 kb on + strand at 973.287 kb on - strand at 973.322 kb on + strand at 973.322 kb on + strand at 973.322 kb on + strand at 973.322 kb on + strand at 973.322 kb on + strand at 973.323 kb on - strand at 973.323 kb on - strand at 973.324 kb on + strand at 973.324 kb on + strand at 973.324 kb on + strand at 973.324 kb on + strand at 973.325 kb on - strand at 973.325 kb on - strand at 973.325 kb on - strand at 973.331 kb on + strand at 973.331 kb on + strand at 973.332 kb on - strand at 973.353 kb on - strand at 973.383 kb on + strand at 973.434 kb on - strand at 973.446 kb on - strand at 973.677 kb on + strand, within Echvi_0852 at 973.677 kb on + strand, within Echvi_0852 at 973.713 kb on - strand, within Echvi_0852 at 973.719 kb on + strand, within Echvi_0852 at 973.719 kb on + strand, within Echvi_0852 at 973.719 kb on + strand, within Echvi_0852 at 973.720 kb on - strand, within Echvi_0852 at 973.728 kb on + strand, within Echvi_0852 at 973.735 kb on + strand, within Echvi_0852 at 973.735 kb on + strand, within Echvi_0852 at 973.736 kb on - strand, within Echvi_0852 at 973.765 kb on - strand, within Echvi_0852 at 973.800 kb on + strand, within Echvi_0852 at 973.820 kb on + strand, within Echvi_0852 at 973.820 kb on + strand, within Echvi_0852 at 973.821 kb on - strand, within Echvi_0852 at 973.821 kb on - strand, within Echvi_0852 at 973.827 kb on - strand, within Echvi_0852 at 973.829 kb on + strand, within Echvi_0852 at 973.829 kb on + strand, within Echvi_0852 at 973.830 kb on - strand, within Echvi_0852 at 973.937 kb on + strand, within Echvi_0852 at 973.938 kb on - strand, within Echvi_0852 at 973.938 kb on - strand, within Echvi_0852 at 974.037 kb on + strand, within Echvi_0852 at 974.037 kb on + strand, within Echvi_0852 at 974.037 kb on + strand, within Echvi_0852 at 974.042 kb on + strand, within Echvi_0852 at 974.042 kb on + strand, within Echvi_0852 at 974.043 kb on - strand, within Echvi_0852 at 974.043 kb on - strand, within Echvi_0852 at 974.060 kb on - strand, within Echvi_0852 at 974.085 kb on + strand, within Echvi_0852 at 974.085 kb on + strand, within Echvi_0852 at 974.085 kb on + strand, within Echvi_0852 at 974.131 kb on - strand, within Echvi_0852
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 971,931 - -0.9 971,956 - +1.1 971,975 - -0.3 971,979 - -0.2 971,998 + -0.3 971,999 - -0.6 971,999 - -1.4 972,007 + +0.9 972,008 - -1.4 972,009 + +0.4 972,009 + -0.1 972,009 + +0.1 972,009 + -0.9 972,012 + -1.4 972,012 + -0.1 972,054 + Echvi_0849 0.15 -0.7 972,338 + Echvi_0849 0.56 -0.0 972,344 + Echvi_0849 0.57 +0.1 972,434 + Echvi_0849 0.70 +0.2 972,457 + Echvi_0849 0.73 +0.6 972,457 + Echvi_0849 0.73 +0.5 972,462 + Echvi_0849 0.74 -0.8 972,463 - Echvi_0849 0.74 -0.0 972,560 + Echvi_0849 0.88 -2.4 972,560 + Echvi_0849 0.88 -1.5 972,574 + -0.5 972,577 + -0.7 972,641 + +0.6 972,641 + +0.1 972,642 - +0.2 972,642 - +0.2 972,693 + Echvi_0850 0.23 -2.4 972,835 + Echvi_0850 0.84 -0.8 972,843 + Echvi_0850 0.88 -1.4 972,844 - Echvi_0850 0.88 -1.8 972,844 - Echvi_0850 0.88 +1.9 972,923 + Echvi_0851 0.15 -1.3 972,924 - Echvi_0851 0.15 -0.6 972,925 + Echvi_0851 0.16 -1.0 972,925 + Echvi_0851 0.16 -0.2 972,926 - Echvi_0851 0.16 -1.8 972,926 - Echvi_0851 0.16 -0.7 972,980 + Echvi_0851 0.36 -2.1 972,980 + Echvi_0851 0.36 -3.1 973,079 + Echvi_0851 0.73 +0.3 973,079 + Echvi_0851 0.73 +0.0 973,080 - Echvi_0851 0.73 +0.1 973,131 + -0.9 973,134 + -0.3 973,156 - -1.6 973,156 - -0.1 973,156 - +0.2 973,166 - +0.3 973,202 - -0.0 973,258 + -0.2 973,258 + -1.1 973,258 + +0.3 973,259 - +0.2 973,259 - +0.4 973,261 + +0.1 973,272 - -0.0 973,272 - +0.3 973,273 + -0.6 973,279 + +2.6 973,279 + +0.6 973,279 + +0.1 973,279 + -0.5 973,287 - -0.2 973,322 + +0.6 973,322 + -0.4 973,322 + +0.2 973,322 + -0.3 973,322 + +0.4 973,323 - +1.4 973,323 - +0.4 973,324 + -0.1 973,324 + -0.7 973,324 + -0.1 973,324 + +0.3 973,325 - +0.2 973,325 - -0.1 973,325 - -0.7 973,331 + +1.0 973,331 + +0.3 973,332 - -1.4 973,353 - -0.3 973,383 + +0.1 973,434 - +2.3 973,446 - +1.4 973,677 + Echvi_0852 0.20 +0.1 973,677 + Echvi_0852 0.20 +0.3 973,713 - Echvi_0852 0.21 -0.4 973,719 + Echvi_0852 0.22 +1.5 973,719 + Echvi_0852 0.22 +1.9 973,719 + Echvi_0852 0.22 +0.2 973,720 - Echvi_0852 0.22 +0.9 973,728 + Echvi_0852 0.22 -0.2 973,735 + Echvi_0852 0.23 -0.3 973,735 + Echvi_0852 0.23 +0.4 973,736 - Echvi_0852 0.23 -1.1 973,765 - Echvi_0852 0.24 +0.7 973,800 + Echvi_0852 0.26 -0.8 973,820 + Echvi_0852 0.27 +0.4 973,820 + Echvi_0852 0.27 +1.1 973,821 - Echvi_0852 0.27 +0.7 973,821 - Echvi_0852 0.27 -1.4 973,827 - Echvi_0852 0.27 -1.3 973,829 + Echvi_0852 0.27 +1.1 973,829 + Echvi_0852 0.27 +0.2 973,830 - Echvi_0852 0.27 +0.7 973,937 + Echvi_0852 0.32 +0.3 973,938 - Echvi_0852 0.32 -0.3 973,938 - Echvi_0852 0.32 -0.3 974,037 + Echvi_0852 0.37 -0.0 974,037 + Echvi_0852 0.37 -0.3 974,037 + Echvi_0852 0.37 -0.1 974,042 + Echvi_0852 0.37 +0.3 974,042 + Echvi_0852 0.37 +0.1 974,043 - Echvi_0852 0.37 +0.2 974,043 - Echvi_0852 0.37 +0.4 974,060 - Echvi_0852 0.38 +0.0 974,085 + Echvi_0852 0.39 +0.5 974,085 + Echvi_0852 0.39 +0.9 974,085 + Echvi_0852 0.39 +0.9 974,131 - Echvi_0852 0.41 +1.0
Or see this region's nucleotide sequence