Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhK and sodC are separated by 0 nucleotides sodC and ydhF are separated by 80 nucleotides ydhF and b1648 are separated by 48 nucleotides b1648 and ydhM are separated by 102 nucleotides
b1645: ydhK - conserved inner membrane protein (NCBI), at 1,720,145 to 1,722,157
ydhK
b1646: sodC - superoxide dismutase, Cu, Zn (NCBI), at 1,722,158 to 1,722,679
sodC
b1647: ydhF - predicted oxidoreductase (NCBI), at 1,722,760 to 1,723,656
ydhF
b1648: b1648 - orf, hypothetical protein (VIMSS), at 1,723,705 to 1,723,944
b1648
b1649: ydhM - predicted DNA-binding transcriptional regulator (RefSeq), at 1,724,047 to 1,724,646
ydhM
Position (kb)
1722
1723
1724 Strain fitness (log2 ratio)
-2
-1
0
1 at 1721.762 kb on - strand, within ydhK at 1721.805 kb on - strand, within ydhK at 1721.805 kb on - strand, within ydhK at 1721.877 kb on - strand, within ydhK at 1721.877 kb on - strand, within ydhK at 1721.941 kb on + strand, within ydhK at 1722.103 kb on - strand at 1722.176 kb on + strand at 1722.692 kb on - strand at 1722.692 kb on - strand at 1722.868 kb on - strand, within ydhF at 1722.868 kb on - strand, within ydhF at 1722.904 kb on - strand, within ydhF at 1722.904 kb on - strand, within ydhF at 1723.132 kb on + strand, within ydhF at 1723.138 kb on - strand, within ydhF at 1723.490 kb on + strand, within ydhF at 1723.797 kb on - strand, within b1648 at 1724.028 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 1,721,762 - ydhK b1645 0.80 +1.0 1,721,805 - ydhK b1645 0.82 +1.3 1,721,805 - ydhK b1645 0.82 -0.2 1,721,877 - ydhK b1645 0.86 +1.5 1,721,877 - ydhK b1645 0.86 +0.6 1,721,941 + ydhK b1645 0.89 +0.4 1,722,103 - +0.7 1,722,176 + +1.2 1,722,692 - +1.6 1,722,692 - -0.4 1,722,868 - ydhF b1647 0.12 -2.2 1,722,868 - ydhF b1647 0.12 -1.0 1,722,904 - ydhF b1647 0.16 -1.0 1,722,904 - ydhF b1647 0.16 -0.3 1,723,132 + ydhF b1647 0.41 -0.7 1,723,138 - ydhF b1647 0.42 -1.7 1,723,490 + ydhF b1647 0.81 +0.1 1,723,797 - b1648 b1648 0.38 +0.7 1,724,028 + -0.2
Or see this region's nucleotide sequence