Strain Fitness in Escherichia coli BW25113 around b3450

Experiment: Chloramphenicol 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.005 mg/ml
3,585,164	-	yhhA	b3448	0.45	+0.0
3,585,166	+	yhhA	b3448	0.45	+0.7
3,585,166	+	yhhA	b3448	0.45	-0.9
3,585,316	+	yhhA	b3448	0.79	-0.7
3,585,366	-				+0.8
3,585,369	-				+0.4
3,585,383	+				-1.1
3,585,431	+				+1.8
3,585,436	+				+0.1
3,585,436	+				+0.6
3,585,436	+				-2.4
3,585,462	-				+2.1
3,585,485	-	ugpQ	b3449	0.12	+0.2
3,585,485	-	ugpQ	b3449	0.12	-0.4
3,585,503	+	ugpQ	b3449	0.15	-0.8
3,585,508	-	ugpQ	b3449	0.15	-0.1
3,585,508	-	ugpQ	b3449	0.15	+1.2
3,585,531	-	ugpQ	b3449	0.19	+0.5
3,585,547	+	ugpQ	b3449	0.21	-0.0
3,585,673	+	ugpQ	b3449	0.38	+0.1
3,585,673	+	ugpQ	b3449	0.38	-1.5
3,585,702	-	ugpQ	b3449	0.42	-0.5
3,585,702	-	ugpQ	b3449	0.42	+0.1
3,585,838	-	ugpQ	b3449	0.60	+1.1
3,585,838	-	ugpQ	b3449	0.60	-1.1
3,585,859	-	ugpQ	b3449	0.63	+0.4
3,586,093	-				+0.1
3,586,198	-				-1.8
3,586,198	-				+0.9
3,586,312	-	ugpC	b3450	0.17	+0.8
3,586,320	-	ugpC	b3450	0.17	-0.3
3,586,396	+	ugpC	b3450	0.25	+0.7
3,586,396	+	ugpC	b3450	0.25	+0.6
3,586,418	-	ugpC	b3450	0.27	+0.6
3,586,418	-	ugpC	b3450	0.27	+1.7
3,586,551	+	ugpC	b3450	0.39	-0.7
3,586,564	-	ugpC	b3450	0.40	+0.8
3,586,564	-	ugpC	b3450	0.40	+0.3
3,586,600	-	ugpC	b3450	0.44	+0.1
3,586,619	-	ugpC	b3450	0.45	+0.4
3,586,619	-	ugpC	b3450	0.45	+0.5
3,586,635	-	ugpC	b3450	0.47	-0.2
3,586,635	-	ugpC	b3450	0.47	+1.2
3,586,675	+	ugpC	b3450	0.51	-0.1
3,586,699	+	ugpC	b3450	0.53	+0.8
3,586,699	+	ugpC	b3450	0.53	+2.2
3,586,718	-	ugpC	b3450	0.55	+1.1
3,586,773	+	ugpC	b3450	0.60	+0.6
3,586,773	+	ugpC	b3450	0.60	+0.9
3,586,834	+	ugpC	b3450	0.65	-1.2
3,586,834	+	ugpC	b3450	0.65	+1.4
3,586,924	-	ugpC	b3450	0.74	+0.4
3,586,929	+	ugpC	b3450	0.74	+0.4
3,586,936	+	ugpC	b3450	0.75	+0.1
3,586,936	+	ugpC	b3450	0.75	+0.6
3,586,952	+	ugpC	b3450	0.76	+2.7
3,586,952	+	ugpC	b3450	0.76	-0.7
3,587,229	+				+3.1
3,587,229	+				+0.1
3,587,298	-	ugpE	b3451	0.11	+0.9
3,587,315	-	ugpE	b3451	0.13	-0.0
3,587,383	+	ugpE	b3451	0.21	-0.2
3,587,669	-	ugpE	b3451	0.55	+0.8
3,587,753	+	ugpE	b3451	0.65	+0.1
3,587,794	-	ugpE	b3451	0.70	-1.2
3,587,822	-	ugpE	b3451	0.73	-1.3
3,587,822	-	ugpE	b3451	0.73	-2.6
3,587,849	+	ugpE	b3451	0.76	+1.4
3,587,857	-	ugpE	b3451	0.77	-1.4
3,587,908	+	ugpE	b3451	0.83	-1.5
3,587,935	+	ugpE	b3451	0.86	+1.0
3,587,970	-				-1.5
3,588,024	+				-0.5
3,588,047	-				-0.7
3,588,047	-				+1.1
3,588,067	+				-0.3