Strain Fitness in Escherichia coli BW25113 around b3068
Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.005 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,213,016 | + | +1.4 | |||
3,213,058 | - | ygjF | b3068 | 0.14 | +0.1 |
3,213,069 | - | ygjF | b3068 | 0.16 | -2.1 |
3,213,276 | - | ygjF | b3068 | 0.57 | +1.6 |
3,213,334 | + | ygjF | b3068 | 0.68 | -1.2 |
3,213,334 | + | ygjF | b3068 | 0.68 | -1.6 |
3,213,449 | - | -1.8 | |||
3,213,497 | - | -0.8 | |||
3,213,497 | - | -1.8 | |||
3,213,692 | + | +1.0 | |||
3,213,789 | + | +0.6 | |||
3,213,868 | - | yqjH | b3070 | 0.16 | +0.6 |
3,213,983 | - | yqjH | b3070 | 0.31 | +0.5 |
3,213,995 | - | yqjH | b3070 | 0.32 | +0.9 |
3,213,998 | - | yqjH | b3070 | 0.33 | -0.7 |
3,213,998 | - | yqjH | b3070 | 0.33 | -0.4 |
3,214,144 | + | yqjH | b3070 | 0.52 | -1.3 |
3,214,168 | - | yqjH | b3070 | 0.55 | -1.4 |
3,214,254 | - | yqjH | b3070 | 0.66 | +0.7 |
3,214,289 | - | yqjH | b3070 | 0.71 | +0.5 |
3,214,334 | - | yqjH | b3070 | 0.76 | +0.7 |
3,214,334 | - | yqjH | b3070 | 0.76 | +0.4 |
3,214,347 | + | yqjH | b3070 | 0.78 | +1.3 |
3,214,383 | - | yqjH | b3070 | 0.83 | +0.1 |
3,214,408 | - | yqjH | b3070 | 0.86 | +1.8 |
3,214,440 | + | -0.7 | |||
3,214,448 | - | +1.6 | |||
3,214,485 | + | +1.4 |
Or see this region's nucleotide sequence