Strain Fitness in Escherichia coli BW25113 around b2981
Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.005 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,126,066 | - | +0.2 | |||
3,126,280 | - | -0.4 | |||
3,126,282 | - | +0.2 | |||
3,126,282 | - | +0.1 | |||
3,126,345 | - | -0.0 | |||
3,126,396 | - | glcC | b2980 | 0.13 | -1.1 |
3,126,427 | + | glcC | b2980 | 0.17 | -0.2 |
3,126,510 | + | glcC | b2980 | 0.28 | -0.1 |
3,126,598 | + | glcC | b2980 | 0.40 | -2.8 |
3,126,626 | + | glcC | b2980 | 0.43 | -2.3 |
3,126,740 | - | glcC | b2980 | 0.58 | +0.3 |
3,126,753 | - | glcC | b2980 | 0.60 | -1.1 |
3,126,865 | - | glcC | b2980 | 0.75 | -1.0 |
3,126,889 | + | glcC | b2980 | 0.78 | -1.7 |
3,126,926 | - | glcC | b2980 | 0.83 | -0.3 |
3,127,086 | - | +1.3 | |||
3,127,101 | - | -0.2 | |||
3,127,148 | - | -0.1 | |||
3,127,169 | - | +0.5 | |||
3,127,169 | - | -1.1 | |||
3,127,234 | - | yghO | b2981 | 0.15 | -0.1 |
3,127,274 | - | yghO | b2981 | 0.19 | -0.4 |
3,127,274 | - | yghO | b2981 | 0.19 | -0.0 |
3,127,435 | + | yghO | b2981 | 0.34 | +0.3 |
3,127,566 | + | yghO | b2981 | 0.46 | +0.7 |
3,127,566 | + | yghO | b2981 | 0.46 | +0.5 |
3,127,607 | + | yghO | b2981 | 0.49 | -0.9 |
3,127,697 | - | yghO | b2981 | 0.57 | -0.1 |
3,127,762 | - | yghO | b2981 | 0.63 | -0.1 |
3,127,762 | - | yghO | b2981 | 0.63 | +0.8 |
3,127,762 | - | yghO | b2981 | 0.63 | -1.0 |
3,127,764 | + | yghO | b2981 | 0.63 | -0.8 |
3,127,772 | - | yghO | b2981 | 0.64 | -0.3 |
3,127,846 | - | yghO | b2981 | 0.71 | +1.3 |
3,127,909 | - | yghO | b2981 | 0.77 | -2.5 |
3,127,909 | - | yghO | b2981 | 0.77 | +0.4 |
3,127,966 | + | yghO | b2981 | 0.82 | -0.0 |
3,128,034 | + | yghO | b2981 | 0.88 | -0.7 |
3,128,034 | + | yghO | b2981 | 0.88 | -1.0 |
3,128,034 | + | yghO | b2981 | 0.88 | +0.2 |
Or see this region's nucleotide sequence