Strain Fitness in Escherichia coli BW25113 around b1513
Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.005 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,598,582 | + | lsrR | b1512 | 0.28 | -0.9 |
1,598,950 | + | lsrR | b1512 | 0.67 | +2.1 |
1,598,950 | + | lsrR | b1512 | 0.67 | -0.6 |
1,598,997 | - | lsrR | b1512 | 0.72 | -0.0 |
1,599,098 | - | lsrR | b1512 | 0.82 | -1.4 |
1,599,110 | - | lsrR | b1512 | 0.84 | +1.7 |
1,599,478 | + | -2.2 | |||
1,599,478 | + | +0.6 | |||
1,599,628 | + | -0.1 | |||
1,599,697 | - | lsrA | b1513 | 0.12 | +1.0 |
1,599,697 | - | lsrA | b1513 | 0.12 | -2.1 |
1,599,928 | - | lsrA | b1513 | 0.27 | +0.6 |
1,599,928 | - | lsrA | b1513 | 0.27 | -1.0 |
1,600,439 | + | lsrA | b1513 | 0.60 | -1.6 |
1,600,518 | + | lsrA | b1513 | 0.65 | -0.1 |
1,600,666 | - | lsrA | b1513 | 0.75 | -1.3 |
1,600,952 | + | +1.9 | |||
1,601,276 | - | lsrC | b1514 | 0.23 | -0.4 |
1,601,423 | + | lsrC | b1514 | 0.37 | -1.0 |
1,601,423 | + | lsrC | b1514 | 0.37 | -1.6 |
1,601,973 | + | +1.4 |
Or see this region's nucleotide sequence