Strain Fitness in Escherichia coli BW25113 around b1382
Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.005 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,442,909 | - | ydbH | b1381 | 0.69 | +0.4 |
1,443,006 | + | ydbH | b1381 | 0.73 | +0.9 |
1,443,047 | + | ydbH | b1381 | 0.75 | -0.7 |
1,443,109 | - | ydbH | b1381 | 0.77 | -2.0 |
1,443,157 | + | ydbH | b1381 | 0.79 | -1.3 |
1,443,157 | + | ydbH | b1381 | 0.79 | +1.0 |
1,443,157 | + | ydbH | b1381 | 0.79 | +2.6 |
1,443,157 | + | ydbH | b1381 | 0.79 | +0.5 |
1,443,257 | - | ydbH | b1381 | 0.83 | +1.9 |
1,443,288 | + | ydbH | b1381 | 0.84 | +1.0 |
1,443,288 | + | ydbH | b1381 | 0.84 | +1.4 |
1,443,299 | - | ydbH | b1381 | 0.84 | +0.6 |
1,443,299 | - | ydbH | b1381 | 0.84 | +1.2 |
1,443,315 | + | ydbH | b1381 | 0.85 | +0.2 |
1,443,315 | + | ydbH | b1381 | 0.85 | -0.4 |
1,443,385 | + | ydbH | b1381 | 0.88 | +0.0 |
1,443,385 | + | ydbH | b1381 | 0.88 | -0.1 |
1,443,393 | - | ydbH | b1381 | 0.88 | +0.3 |
1,443,414 | + | ydbH | b1381 | 0.89 | +0.6 |
1,443,414 | + | ydbH | b1381 | 0.89 | +0.1 |
1,443,455 | + | +1.1 | |||
1,443,512 | - | +0.9 | |||
1,443,522 | - | -1.4 | |||
1,443,524 | + | +1.1 | |||
1,443,525 | + | -2.0 | |||
1,443,525 | + | -0.4 | |||
1,443,532 | - | +0.0 | |||
1,443,541 | - | +1.0 | |||
1,443,606 | + | -0.4 | |||
1,443,614 | + | -0.4 | |||
1,443,622 | - | +0.2 | |||
1,443,644 | + | +0.7 | |||
1,443,652 | - | +2.0 | |||
1,443,662 | - | +0.0 | |||
1,443,662 | - | -1.1 | |||
1,443,683 | - | +2.4 | |||
1,443,683 | - | +1.2 | |||
1,443,783 | + | ynbE | b1382 | 0.39 | -1.1 |
1,443,890 | + | +0.3 | |||
1,443,908 | + | +1.3 | |||
1,443,951 | + | ydbL | b1383 | 0.14 | -0.4 |
1,443,956 | + | ydbL | b1383 | 0.16 | -1.7 |
1,443,956 | + | ydbL | b1383 | 0.16 | +1.9 |
1,443,963 | + | ydbL | b1383 | 0.18 | -3.5 |
1,444,102 | + | ydbL | b1383 | 0.61 | -1.5 |
1,444,250 | + | -1.5 | |||
1,444,250 | + | -0.1 | |||
1,444,256 | + | +1.2 | |||
1,444,390 | - | +0.5 | |||
1,444,537 | - | feaR | b1384 | 0.15 | -0.5 |
1,444,581 | - | feaR | b1384 | 0.20 | +0.8 |
1,444,611 | - | feaR | b1384 | 0.23 | +0.0 |
1,444,640 | - | feaR | b1384 | 0.26 | +0.5 |
1,444,787 | - | feaR | b1384 | 0.42 | +1.0 |
1,444,845 | - | feaR | b1384 | 0.49 | -1.4 |
1,444,866 | - | feaR | b1384 | 0.51 | -1.0 |
1,444,866 | - | feaR | b1384 | 0.51 | -0.1 |
1,444,872 | - | feaR | b1384 | 0.52 | +0.5 |
Or see this region's nucleotide sequence