Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modC and ybhA are separated by 0 nucleotides ybhA and ybhE are separated by 154 nucleotides
b0765: modC - molybdate transporter subunit (NCBI), at 795,777 to 796,835
modC
b0766: ybhA - predicted hydrolase (NCBI), at 796,836 to 797,654
ybhA
b0767: ybhE - 6-phosphogluconolactonase (NCBI), at 797,809 to 798,804
ybhE
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2 at 796.082 kb on + strand, within modC at 796.082 kb on + strand, within modC at 796.218 kb on + strand, within modC at 796.234 kb on + strand, within modC at 796.234 kb on + strand, within modC at 796.352 kb on + strand, within modC at 796.369 kb on + strand, within modC at 796.369 kb on + strand, within modC at 796.377 kb on + strand, within modC at 796.377 kb on + strand, within modC at 796.377 kb on + strand, within modC at 796.377 kb on - strand, within modC at 796.377 kb on - strand, within modC at 796.590 kb on - strand, within modC at 796.862 kb on + strand at 797.012 kb on - strand, within ybhA at 797.022 kb on - strand, within ybhA at 797.100 kb on - strand, within ybhA at 797.122 kb on - strand, within ybhA at 797.289 kb on + strand, within ybhA at 797.318 kb on - strand, within ybhA at 797.334 kb on + strand, within ybhA at 797.334 kb on + strand at 797.380 kb on - strand, within ybhA at 797.565 kb on + strand, within ybhA at 797.565 kb on + strand, within ybhA at 797.592 kb on - strand at 797.615 kb on - strand at 797.615 kb on - strand at 797.702 kb on + strand at 797.702 kb on + strand at 797.775 kb on + strand at 797.960 kb on + strand, within ybhE at 798.019 kb on + strand, within ybhE at 798.080 kb on + strand, within ybhE at 798.105 kb on - strand, within ybhE at 798.134 kb on - strand at 798.207 kb on + strand, within ybhE at 798.207 kb on + strand, within ybhE at 798.414 kb on - strand, within ybhE at 798.414 kb on - strand, within ybhE at 798.502 kb on + strand, within ybhE at 798.510 kb on - strand, within ybhE at 798.533 kb on + strand, within ybhE at 798.533 kb on + strand, within ybhE at 798.533 kb on + strand, within ybhE
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 796,082 + modC b0765 0.29 -0.7 796,082 + modC b0765 0.29 +0.6 796,218 + modC b0765 0.42 +0.9 796,234 + modC b0765 0.43 +0.9 796,234 + modC b0765 0.43 -0.9 796,352 + modC b0765 0.54 -1.4 796,369 + modC b0765 0.56 +1.5 796,369 + modC b0765 0.56 +0.1 796,377 + modC b0765 0.57 -1.4 796,377 + modC b0765 0.57 -0.7 796,377 + modC b0765 0.57 -0.1 796,377 - modC b0765 0.57 +1.1 796,377 - modC b0765 0.57 -1.3 796,590 - modC b0765 0.77 +0.9 796,862 + +1.5 797,012 - ybhA b0766 0.21 +1.1 797,022 - ybhA b0766 0.23 -0.3 797,100 - ybhA b0766 0.32 -0.7 797,122 - ybhA b0766 0.35 -0.9 797,289 + ybhA b0766 0.55 -1.0 797,318 - ybhA b0766 0.59 +0.4 797,334 + ybhA b0766 0.61 -0.6 797,334 + +1.9 797,380 - ybhA b0766 0.66 -1.1 797,565 + ybhA b0766 0.89 -0.1 797,565 + ybhA b0766 0.89 -1.8 797,592 - +0.9 797,615 - +0.7 797,615 - -0.4 797,702 + -0.1 797,702 + -0.1 797,775 + +0.2 797,960 + ybhE b0767 0.15 -0.7 798,019 + ybhE b0767 0.21 -1.1 798,080 + ybhE b0767 0.27 -0.4 798,105 - ybhE b0767 0.30 +0.9 798,134 - +0.9 798,207 + ybhE b0767 0.40 +2.5 798,207 + ybhE b0767 0.40 -0.1 798,414 - ybhE b0767 0.61 +0.1 798,414 - ybhE b0767 0.61 -0.4 798,502 + ybhE b0767 0.70 +0.5 798,510 - ybhE b0767 0.70 +1.5 798,533 + ybhE b0767 0.73 +0.3 798,533 + ybhE b0767 0.73 -1.7 798,533 + ybhE b0767 0.73 -0.4
Or see this region's nucleotide sequence