Strain Fitness in Escherichia coli BW25113 around b0178
Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.005 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 200,394 | + | +0.5 | |||
| 200,394 | + | +1.6 | |||
| 200,394 | + | -0.5 | |||
| 200,414 | + | -1.1 | |||
| 200,414 | + | -0.1 | |||
| 200,439 | + | -0.1 | |||
| 200,523 | + | -0.9 | |||
| 200,523 | + | -0.8 | |||
| 200,635 | + | hlpA | b0178 | 0.31 | +0.9 |
| 200,635 | + | hlpA | b0178 | 0.31 | -0.9 |
| 200,649 | + | hlpA | b0178 | 0.34 | -0.9 |
| 200,785 | + | hlpA | b0178 | 0.62 | -0.1 |
| 200,834 | + | hlpA | b0178 | 0.72 | -1.9 |
| 200,903 | + | hlpA | b0178 | 0.87 | -0.1 |
| 200,903 | + | hlpA | b0178 | 0.87 | -0.1 |
| 200,924 | + | -0.4 |
Or see this region's nucleotide sequence