Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4829 and PfGW456L13_4830 are separated by 39 nucleotides PfGW456L13_4830 and PfGW456L13_4831 overlap by 20 nucleotides
PfGW456L13_4829 - Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family, at 5,391,525 to 5,392,256
_4829
PfGW456L13_4830 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 5,392,296 to 5,393,402
_4830
PfGW456L13_4831 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) <small>(from data)</small>, at 5,393,383 to 5,394,405
_4831
Position (kb) 5392
5393
5394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5391.304 kb on - strand at 5391.304 kb on - strand at 5391.319 kb on - strand at 5391.349 kb on + strand at 5391.350 kb on - strand at 5391.369 kb on - strand at 5391.404 kb on + strand at 5391.404 kb on + strand at 5391.404 kb on + strand at 5391.405 kb on - strand at 5391.415 kb on + strand at 5391.415 kb on + strand at 5391.416 kb on - strand at 5391.416 kb on - strand at 5391.416 kb on - strand at 5391.416 kb on - strand at 5391.416 kb on - strand at 5391.479 kb on - strand at 5391.491 kb on + strand at 5391.500 kb on + strand at 5391.518 kb on + strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.522 kb on + strand at 5391.522 kb on + strand at 5391.522 kb on + strand at 5391.522 kb on + strand at 5391.576 kb on + strand at 5391.576 kb on + strand at 5391.576 kb on + strand at 5392.039 kb on - strand, within PfGW456L13_4829 at 5392.039 kb on - strand, within PfGW456L13_4829 at 5392.209 kb on + strand at 5392.209 kb on + strand at 5392.209 kb on + strand at 5392.209 kb on + strand at 5392.209 kb on + strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.225 kb on - strand at 5392.225 kb on - strand at 5392.227 kb on + strand at 5392.227 kb on + strand at 5392.227 kb on + strand at 5392.227 kb on + strand at 5392.228 kb on - strand at 5392.310 kb on + strand at 5392.311 kb on - strand at 5392.416 kb on + strand, within PfGW456L13_4830 at 5392.417 kb on - strand, within PfGW456L13_4830 at 5392.529 kb on + strand, within PfGW456L13_4830 at 5392.529 kb on + strand, within PfGW456L13_4830 at 5392.529 kb on + strand, within PfGW456L13_4830 at 5392.529 kb on + strand, within PfGW456L13_4830 at 5392.529 kb on + strand, within PfGW456L13_4830 at 5392.529 kb on + strand, within PfGW456L13_4830 at 5392.530 kb on - strand, within PfGW456L13_4830 at 5392.530 kb on - strand, within PfGW456L13_4830 at 5392.573 kb on + strand, within PfGW456L13_4830 at 5392.574 kb on - strand, within PfGW456L13_4830 at 5392.645 kb on + strand, within PfGW456L13_4830 at 5392.646 kb on - strand, within PfGW456L13_4830 at 5392.646 kb on - strand, within PfGW456L13_4830 at 5392.662 kb on + strand, within PfGW456L13_4830 at 5392.662 kb on + strand, within PfGW456L13_4830 at 5392.662 kb on + strand, within PfGW456L13_4830 at 5392.663 kb on - strand, within PfGW456L13_4830 at 5392.734 kb on + strand, within PfGW456L13_4830 at 5392.735 kb on - strand, within PfGW456L13_4830 at 5392.735 kb on - strand, within PfGW456L13_4830 at 5392.735 kb on - strand, within PfGW456L13_4830 at 5392.794 kb on - strand, within PfGW456L13_4830 at 5392.857 kb on + strand, within PfGW456L13_4830 at 5392.857 kb on + strand, within PfGW456L13_4830 at 5392.857 kb on + strand, within PfGW456L13_4830 at 5392.857 kb on + strand, within PfGW456L13_4830 at 5392.858 kb on - strand, within PfGW456L13_4830 at 5392.858 kb on - strand, within PfGW456L13_4830 at 5392.858 kb on - strand, within PfGW456L13_4830 at 5392.858 kb on - strand, within PfGW456L13_4830 at 5392.858 kb on - strand, within PfGW456L13_4830 at 5392.858 kb on - strand, within PfGW456L13_4830 at 5392.911 kb on + strand, within PfGW456L13_4830 at 5392.911 kb on + strand, within PfGW456L13_4830 at 5392.911 kb on + strand, within PfGW456L13_4830 at 5392.911 kb on + strand, within PfGW456L13_4830 at 5392.911 kb on + strand, within PfGW456L13_4830 at 5392.911 kb on + strand, within PfGW456L13_4830 at 5392.911 kb on + strand, within PfGW456L13_4830 at 5392.912 kb on - strand, within PfGW456L13_4830 at 5392.912 kb on - strand, within PfGW456L13_4830 at 5392.912 kb on - strand, within PfGW456L13_4830 at 5392.912 kb on - strand, within PfGW456L13_4830 at 5392.980 kb on + strand, within PfGW456L13_4830 at 5392.981 kb on - strand, within PfGW456L13_4830 at 5392.981 kb on - strand, within PfGW456L13_4830 at 5392.981 kb on - strand, within PfGW456L13_4830 at 5393.058 kb on + strand, within PfGW456L13_4830 at 5393.058 kb on + strand, within PfGW456L13_4830 at 5393.058 kb on + strand, within PfGW456L13_4830 at 5393.107 kb on - strand, within PfGW456L13_4830 at 5393.275 kb on - strand, within PfGW456L13_4830 at 5393.275 kb on - strand, within PfGW456L13_4830 at 5393.441 kb on + strand at 5393.441 kb on + strand at 5393.442 kb on - strand at 5393.442 kb on - strand at 5393.442 kb on - strand at 5393.548 kb on + strand, within PfGW456L13_4831 at 5393.548 kb on + strand, within PfGW456L13_4831 at 5393.549 kb on - strand, within PfGW456L13_4831 at 5393.557 kb on + strand, within PfGW456L13_4831 at 5393.838 kb on + strand, within PfGW456L13_4831 at 5394.133 kb on + strand, within PfGW456L13_4831 at 5394.319 kb on + strand at 5394.319 kb on + strand at 5394.319 kb on + strand at 5394.319 kb on + strand at 5394.320 kb on - strand at 5394.396 kb on + strand at 5394.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 5,391,304 - -3.1 5,391,304 - -0.2 5,391,319 - -1.6 5,391,349 + -2.5 5,391,350 - -0.2 5,391,369 - -2.1 5,391,404 + -2.3 5,391,404 + -2.8 5,391,404 + -2.4 5,391,405 - +0.4 5,391,415 + -1.5 5,391,415 + +1.1 5,391,416 - +0.6 5,391,416 - +1.5 5,391,416 - -3.7 5,391,416 - -0.2 5,391,416 - -1.8 5,391,479 - -2.6 5,391,491 + -3.3 5,391,500 + +0.4 5,391,518 + +2.1 5,391,519 - -0.2 5,391,519 - +0.6 5,391,519 - +0.8 5,391,519 - +1.3 5,391,519 - -2.1 5,391,519 - +0.9 5,391,522 + -4.0 5,391,522 + +1.9 5,391,522 + +1.1 5,391,522 + +1.4 5,391,576 + -1.6 5,391,576 + +0.8 5,391,576 + +0.1 5,392,039 - PfGW456L13_4829 0.70 +0.4 5,392,039 - PfGW456L13_4829 0.70 +1.4 5,392,209 + -2.3 5,392,209 + -0.4 5,392,209 + +0.8 5,392,209 + -0.2 5,392,209 + +1.3 5,392,210 - +1.4 5,392,210 - -0.6 5,392,210 - +0.5 5,392,210 - -3.1 5,392,210 - +0.9 5,392,210 - +1.2 5,392,210 - -0.7 5,392,210 - +1.6 5,392,210 - +2.9 5,392,225 - -1.2 5,392,225 - +0.9 5,392,227 + -0.2 5,392,227 + +0.4 5,392,227 + -1.3 5,392,227 + +4.2 5,392,228 - +0.8 5,392,310 + +0.2 5,392,311 - +1.4 5,392,416 + PfGW456L13_4830 0.11 -0.4 5,392,417 - PfGW456L13_4830 0.11 -3.0 5,392,529 + PfGW456L13_4830 0.21 -0.1 5,392,529 + PfGW456L13_4830 0.21 -0.6 5,392,529 + PfGW456L13_4830 0.21 +0.1 5,392,529 + PfGW456L13_4830 0.21 -1.1 5,392,529 + PfGW456L13_4830 0.21 -0.3 5,392,529 + PfGW456L13_4830 0.21 -3.6 5,392,530 - PfGW456L13_4830 0.21 +0.6 5,392,530 - PfGW456L13_4830 0.21 +0.9 5,392,573 + PfGW456L13_4830 0.25 +0.1 5,392,574 - PfGW456L13_4830 0.25 -1.8 5,392,645 + PfGW456L13_4830 0.32 +0.7 5,392,646 - PfGW456L13_4830 0.32 +1.2 5,392,646 - PfGW456L13_4830 0.32 -1.1 5,392,662 + PfGW456L13_4830 0.33 +0.0 5,392,662 + PfGW456L13_4830 0.33 +1.9 5,392,662 + PfGW456L13_4830 0.33 -0.9 5,392,663 - PfGW456L13_4830 0.33 +0.7 5,392,734 + PfGW456L13_4830 0.40 -0.2 5,392,735 - PfGW456L13_4830 0.40 +0.5 5,392,735 - PfGW456L13_4830 0.40 -4.2 5,392,735 - PfGW456L13_4830 0.40 +0.4 5,392,794 - PfGW456L13_4830 0.45 +1.6 5,392,857 + PfGW456L13_4830 0.51 +2.8 5,392,857 + PfGW456L13_4830 0.51 -0.8 5,392,857 + PfGW456L13_4830 0.51 -2.3 5,392,857 + PfGW456L13_4830 0.51 +1.2 5,392,858 - PfGW456L13_4830 0.51 +0.8 5,392,858 - PfGW456L13_4830 0.51 -0.5 5,392,858 - PfGW456L13_4830 0.51 -0.3 5,392,858 - PfGW456L13_4830 0.51 +0.8 5,392,858 - PfGW456L13_4830 0.51 +2.1 5,392,858 - PfGW456L13_4830 0.51 +1.2 5,392,911 + PfGW456L13_4830 0.56 -1.2 5,392,911 + PfGW456L13_4830 0.56 +1.7 5,392,911 + PfGW456L13_4830 0.56 -3.0 5,392,911 + PfGW456L13_4830 0.56 +1.1 5,392,911 + PfGW456L13_4830 0.56 +0.6 5,392,911 + PfGW456L13_4830 0.56 +0.9 5,392,911 + PfGW456L13_4830 0.56 +1.2 5,392,912 - PfGW456L13_4830 0.56 +2.0 5,392,912 - PfGW456L13_4830 0.56 -1.4 5,392,912 - PfGW456L13_4830 0.56 -0.3 5,392,912 - PfGW456L13_4830 0.56 +1.0 5,392,980 + PfGW456L13_4830 0.62 +0.3 5,392,981 - PfGW456L13_4830 0.62 +1.3 5,392,981 - PfGW456L13_4830 0.62 +2.2 5,392,981 - PfGW456L13_4830 0.62 -1.0 5,393,058 + PfGW456L13_4830 0.69 +1.3 5,393,058 + PfGW456L13_4830 0.69 -1.3 5,393,058 + PfGW456L13_4830 0.69 -2.4 5,393,107 - PfGW456L13_4830 0.73 +0.6 5,393,275 - PfGW456L13_4830 0.88 +0.9 5,393,275 - PfGW456L13_4830 0.88 -0.7 5,393,441 + -0.6 5,393,441 + -3.7 5,393,442 - -2.0 5,393,442 - +0.7 5,393,442 - +0.1 5,393,548 + PfGW456L13_4831 0.16 -1.3 5,393,548 + PfGW456L13_4831 0.16 +0.3 5,393,549 - PfGW456L13_4831 0.16 +1.2 5,393,557 + PfGW456L13_4831 0.17 +1.1 5,393,838 + PfGW456L13_4831 0.44 +1.2 5,394,133 + PfGW456L13_4831 0.73 -1.6 5,394,319 + +0.1 5,394,319 + +0.5 5,394,319 + +0.2 5,394,319 + +2.0 5,394,320 - +0.2 5,394,396 + +0.4 5,394,397 - -0.3
Or see this region's nucleotide sequence