Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_398 and PfGW456L13_399 are separated by 191 nucleotides PfGW456L13_399 and PfGW456L13_400 are separated by 106 nucleotides PfGW456L13_400 and PfGW456L13_401 overlap by 4 nucleotides
PfGW456L13_398 - 4-aminobutyrate aminotransferase (EC 2.6.1.19), at 457,932 to 460,844
_398
PfGW456L13_399 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 461,036 to 461,581
_399
PfGW456L13_400 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 461,688 to 463,496
_400
PfGW456L13_401 - C4-dicarboxylate transport transcriptional regulatory protein, at 463,493 to 464,887
_401
Position (kb) 461
462
463
464 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 460.705 kb on + strand at 460.705 kb on + strand at 460.756 kb on + strand at 460.844 kb on + strand at 460.844 kb on + strand at 460.844 kb on + strand at 460.844 kb on + strand at 460.844 kb on + strand at 460.844 kb on + strand at 460.844 kb on + strand at 460.844 kb on + strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.845 kb on - strand at 460.865 kb on - strand at 460.867 kb on + strand at 460.867 kb on + strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.876 kb on - strand at 460.876 kb on - strand at 460.876 kb on - strand at 460.876 kb on - strand at 460.877 kb on + strand at 460.898 kb on + strand at 460.954 kb on - strand at 460.961 kb on + strand at 460.961 kb on + strand at 461.043 kb on + strand at 461.043 kb on + strand at 461.044 kb on - strand at 461.044 kb on - strand at 461.044 kb on - strand at 461.044 kb on - strand at 461.044 kb on - strand at 461.044 kb on - strand at 461.044 kb on - strand at 461.649 kb on + strand at 461.649 kb on + strand at 461.649 kb on + strand at 461.649 kb on + strand at 461.650 kb on - strand at 461.650 kb on - strand at 461.655 kb on + strand at 461.655 kb on + strand at 461.655 kb on + strand at 461.656 kb on - strand at 461.666 kb on + strand at 461.667 kb on - strand at 461.790 kb on + strand at 461.791 kb on - strand at 461.791 kb on - strand at 461.794 kb on - strand at 461.838 kb on + strand at 461.838 kb on + strand at 461.838 kb on + strand at 461.838 kb on + strand at 461.838 kb on + strand at 461.838 kb on + strand at 461.839 kb on - strand at 461.839 kb on - strand at 461.871 kb on + strand, within PfGW456L13_400 at 461.871 kb on + strand, within PfGW456L13_400 at 461.872 kb on - strand, within PfGW456L13_400 at 461.872 kb on - strand, within PfGW456L13_400 at 461.872 kb on - strand, within PfGW456L13_400 at 462.009 kb on + strand, within PfGW456L13_400 at 462.009 kb on + strand, within PfGW456L13_400 at 462.009 kb on + strand, within PfGW456L13_400 at 462.009 kb on + strand, within PfGW456L13_400 at 462.009 kb on + strand, within PfGW456L13_400 at 462.010 kb on - strand, within PfGW456L13_400 at 462.010 kb on - strand, within PfGW456L13_400 at 462.010 kb on - strand, within PfGW456L13_400 at 462.010 kb on - strand, within PfGW456L13_400 at 462.010 kb on - strand, within PfGW456L13_400 at 462.010 kb on - strand, within PfGW456L13_400 at 462.010 kb on - strand, within PfGW456L13_400 at 462.099 kb on + strand, within PfGW456L13_400 at 462.171 kb on + strand, within PfGW456L13_400 at 462.172 kb on - strand, within PfGW456L13_400 at 462.172 kb on - strand, within PfGW456L13_400 at 462.172 kb on - strand, within PfGW456L13_400 at 462.527 kb on + strand, within PfGW456L13_400 at 462.527 kb on + strand, within PfGW456L13_400 at 462.528 kb on - strand, within PfGW456L13_400 at 462.528 kb on - strand, within PfGW456L13_400 at 462.528 kb on - strand, within PfGW456L13_400 at 462.528 kb on - strand, within PfGW456L13_400 at 462.528 kb on - strand, within PfGW456L13_400 at 462.528 kb on - strand, within PfGW456L13_400 at 462.606 kb on + strand, within PfGW456L13_400 at 462.606 kb on + strand, within PfGW456L13_400 at 462.606 kb on + strand, within PfGW456L13_400 at 462.748 kb on + strand, within PfGW456L13_400 at 462.856 kb on - strand, within PfGW456L13_400 at 463.144 kb on + strand, within PfGW456L13_400 at 463.144 kb on + strand, within PfGW456L13_400 at 463.202 kb on + strand, within PfGW456L13_400 at 463.203 kb on - strand, within PfGW456L13_400 at 463.203 kb on - strand, within PfGW456L13_400 at 463.203 kb on - strand, within PfGW456L13_400 at 463.248 kb on + strand, within PfGW456L13_400 at 463.248 kb on + strand, within PfGW456L13_400 at 463.311 kb on + strand, within PfGW456L13_400 at 463.311 kb on + strand, within PfGW456L13_400 at 463.311 kb on + strand, within PfGW456L13_400 at 463.311 kb on + strand, within PfGW456L13_400 at 463.312 kb on - strand, within PfGW456L13_400 at 463.312 kb on - strand, within PfGW456L13_400 at 463.312 kb on - strand, within PfGW456L13_400 at 463.728 kb on + strand, within PfGW456L13_401 at 463.796 kb on + strand, within PfGW456L13_401 at 463.797 kb on - strand, within PfGW456L13_401 at 463.797 kb on - strand, within PfGW456L13_401 at 463.797 kb on - strand, within PfGW456L13_401 at 463.923 kb on + strand, within PfGW456L13_401 at 463.923 kb on + strand, within PfGW456L13_401 at 463.923 kb on + strand, within PfGW456L13_401 at 463.923 kb on + strand, within PfGW456L13_401 at 463.923 kb on + strand, within PfGW456L13_401 at 463.923 kb on + strand, within PfGW456L13_401 at 463.924 kb on - strand, within PfGW456L13_401 at 463.924 kb on - strand, within PfGW456L13_401 at 463.924 kb on - strand, within PfGW456L13_401 at 464.408 kb on + strand, within PfGW456L13_401 at 464.408 kb on + strand, within PfGW456L13_401 at 464.408 kb on + strand, within PfGW456L13_401 at 464.408 kb on + strand, within PfGW456L13_401 at 464.409 kb on - strand, within PfGW456L13_401 at 464.409 kb on - strand, within PfGW456L13_401 at 464.486 kb on + strand, within PfGW456L13_401 at 464.486 kb on + strand, within PfGW456L13_401 at 464.486 kb on + strand, within PfGW456L13_401
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 460,705 + -1.5 460,705 + +1.3 460,756 + +0.9 460,844 + +0.7 460,844 + +2.1 460,844 + +0.1 460,844 + +1.0 460,844 + -2.1 460,844 + -0.2 460,844 + +2.2 460,844 + -0.2 460,845 - -0.1 460,845 - -1.3 460,845 - +0.4 460,845 - -1.2 460,845 - -0.0 460,845 - -1.3 460,845 - -4.1 460,845 - +0.7 460,845 - +0.1 460,845 - -1.8 460,845 - -1.6 460,845 - +0.7 460,845 - -0.6 460,865 - +0.2 460,867 + +2.1 460,867 + -2.8 460,875 + +0.8 460,875 + +1.9 460,875 + -0.3 460,875 + +1.0 460,875 + -2.9 460,875 + +0.0 460,875 + -1.3 460,876 - +0.5 460,876 - +1.0 460,876 - +0.4 460,876 - -3.4 460,877 + +0.4 460,898 + +0.6 460,954 - +0.7 460,961 + -3.1 460,961 + -1.0 461,043 + +1.9 461,043 + +1.6 461,044 - +1.5 461,044 - +2.5 461,044 - +2.0 461,044 - -2.4 461,044 - -1.9 461,044 - +1.7 461,044 - -2.1 461,649 + +0.7 461,649 + -2.4 461,649 + +1.7 461,649 + +1.3 461,650 - +0.4 461,650 - +1.1 461,655 + +1.5 461,655 + -0.6 461,655 + +1.8 461,656 - +0.5 461,666 + +0.2 461,667 - +0.3 461,790 + +1.7 461,791 - -3.6 461,791 - -0.9 461,794 - +1.7 461,838 + -4.5 461,838 + -0.8 461,838 + -2.7 461,838 + -0.6 461,838 + -3.1 461,838 + +2.5 461,839 - +0.1 461,839 - -0.9 461,871 + PfGW456L13_400 0.10 +0.5 461,871 + PfGW456L13_400 0.10 -2.8 461,872 - PfGW456L13_400 0.10 -0.3 461,872 - PfGW456L13_400 0.10 -2.4 461,872 - PfGW456L13_400 0.10 +0.7 462,009 + PfGW456L13_400 0.18 +1.0 462,009 + PfGW456L13_400 0.18 -0.6 462,009 + PfGW456L13_400 0.18 +1.2 462,009 + PfGW456L13_400 0.18 -1.1 462,009 + PfGW456L13_400 0.18 +0.5 462,010 - PfGW456L13_400 0.18 +0.3 462,010 - PfGW456L13_400 0.18 +0.9 462,010 - PfGW456L13_400 0.18 +2.0 462,010 - PfGW456L13_400 0.18 +0.2 462,010 - PfGW456L13_400 0.18 +2.1 462,010 - PfGW456L13_400 0.18 +0.3 462,010 - PfGW456L13_400 0.18 +1.8 462,099 + PfGW456L13_400 0.23 -2.7 462,171 + PfGW456L13_400 0.27 -3.3 462,172 - PfGW456L13_400 0.27 +0.1 462,172 - PfGW456L13_400 0.27 +0.3 462,172 - PfGW456L13_400 0.27 -0.2 462,527 + PfGW456L13_400 0.46 +1.5 462,527 + PfGW456L13_400 0.46 -1.1 462,528 - PfGW456L13_400 0.46 +0.4 462,528 - PfGW456L13_400 0.46 -0.5 462,528 - PfGW456L13_400 0.46 +0.6 462,528 - PfGW456L13_400 0.46 +1.3 462,528 - PfGW456L13_400 0.46 +1.5 462,528 - PfGW456L13_400 0.46 +1.1 462,606 + PfGW456L13_400 0.51 +1.4 462,606 + PfGW456L13_400 0.51 -3.8 462,606 + PfGW456L13_400 0.51 +0.5 462,748 + PfGW456L13_400 0.59 -1.7 462,856 - PfGW456L13_400 0.65 -4.1 463,144 + PfGW456L13_400 0.80 +1.9 463,144 + PfGW456L13_400 0.80 -1.4 463,202 + PfGW456L13_400 0.84 +1.1 463,203 - PfGW456L13_400 0.84 +1.6 463,203 - PfGW456L13_400 0.84 +1.8 463,203 - PfGW456L13_400 0.84 -1.2 463,248 + PfGW456L13_400 0.86 +1.0 463,248 + PfGW456L13_400 0.86 -3.8 463,311 + PfGW456L13_400 0.90 -3.5 463,311 + PfGW456L13_400 0.90 -0.2 463,311 + PfGW456L13_400 0.90 -1.1 463,311 + PfGW456L13_400 0.90 -1.5 463,312 - PfGW456L13_400 0.90 +1.6 463,312 - PfGW456L13_400 0.90 +0.2 463,312 - PfGW456L13_400 0.90 +1.7 463,728 + PfGW456L13_401 0.17 +0.9 463,796 + PfGW456L13_401 0.22 +1.1 463,797 - PfGW456L13_401 0.22 -1.0 463,797 - PfGW456L13_401 0.22 -0.5 463,797 - PfGW456L13_401 0.22 +0.9 463,923 + PfGW456L13_401 0.31 -1.2 463,923 + PfGW456L13_401 0.31 +0.4 463,923 + PfGW456L13_401 0.31 +2.9 463,923 + PfGW456L13_401 0.31 -3.3 463,923 + PfGW456L13_401 0.31 -1.2 463,923 + PfGW456L13_401 0.31 -0.2 463,924 - PfGW456L13_401 0.31 -1.3 463,924 - PfGW456L13_401 0.31 +2.1 463,924 - PfGW456L13_401 0.31 +0.2 464,408 + PfGW456L13_401 0.66 -1.9 464,408 + PfGW456L13_401 0.66 -1.9 464,408 + PfGW456L13_401 0.66 -3.0 464,408 + PfGW456L13_401 0.66 -0.6 464,409 - PfGW456L13_401 0.66 +3.5 464,409 - PfGW456L13_401 0.66 -0.4 464,486 + PfGW456L13_401 0.71 -0.1 464,486 + PfGW456L13_401 0.71 +0.8 464,486 + PfGW456L13_401 0.71 +1.0
Or see this region's nucleotide sequence