Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_363 and PfGW456L13_364 are separated by 229 nucleotides PfGW456L13_364 and PfGW456L13_365 are separated by 78 nucleotides PfGW456L13_365 and PfGW456L13_366 overlap by 4 nucleotides
PfGW456L13_363 - MFS permease, at 421,939 to 423,603
_363
PfGW456L13_364 - FIG00958480: hypothetical protein, at 423,833 to 424,237
_364
PfGW456L13_365 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 424,316 to 426,547
_365
PfGW456L13_366 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 426,544 to 427,611
_366
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 423.317 kb on + strand, within PfGW456L13_363 at 423.317 kb on + strand, within PfGW456L13_363 at 423.318 kb on - strand, within PfGW456L13_363 at 423.318 kb on - strand, within PfGW456L13_363 at 423.318 kb on - strand, within PfGW456L13_363 at 423.318 kb on - strand, within PfGW456L13_363 at 423.318 kb on - strand, within PfGW456L13_363 at 423.458 kb on + strand at 423.459 kb on - strand at 423.608 kb on + strand at 423.608 kb on + strand at 423.608 kb on + strand at 423.609 kb on - strand at 423.609 kb on - strand at 423.619 kb on + strand at 423.619 kb on + strand at 423.619 kb on + strand at 423.619 kb on + strand at 423.619 kb on + strand at 423.620 kb on - strand at 423.620 kb on - strand at 423.620 kb on - strand at 423.620 kb on - strand at 423.620 kb on - strand at 423.659 kb on + strand at 423.660 kb on - strand at 423.660 kb on - strand at 423.687 kb on - strand at 423.743 kb on + strand at 423.743 kb on + strand at 423.744 kb on - strand at 423.744 kb on - strand at 423.744 kb on - strand at 423.899 kb on + strand, within PfGW456L13_364 at 423.899 kb on + strand, within PfGW456L13_364 at 423.899 kb on + strand, within PfGW456L13_364 at 423.900 kb on - strand, within PfGW456L13_364 at 423.900 kb on - strand, within PfGW456L13_364 at 423.900 kb on - strand, within PfGW456L13_364 at 424.062 kb on + strand, within PfGW456L13_364 at 424.062 kb on + strand, within PfGW456L13_364 at 424.062 kb on + strand, within PfGW456L13_364 at 424.063 kb on - strand, within PfGW456L13_364 at 424.063 kb on - strand, within PfGW456L13_364 at 424.063 kb on - strand, within PfGW456L13_364 at 424.063 kb on - strand, within PfGW456L13_364 at 424.063 kb on - strand, within PfGW456L13_364 at 424.063 kb on - strand, within PfGW456L13_364 at 424.063 kb on - strand, within PfGW456L13_364 at 424.267 kb on + strand at 424.267 kb on + strand at 424.267 kb on + strand at 424.268 kb on - strand at 424.268 kb on - strand at 424.268 kb on - strand at 424.268 kb on - strand at 424.269 kb on + strand at 424.269 kb on + strand at 424.269 kb on + strand at 424.269 kb on + strand at 424.269 kb on + strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.270 kb on - strand at 424.297 kb on + strand at 424.301 kb on + strand at 424.301 kb on + strand at 424.301 kb on + strand at 424.301 kb on + strand at 424.301 kb on + strand at 424.302 kb on - strand at 424.302 kb on - strand at 424.302 kb on - strand at 424.302 kb on - strand at 424.302 kb on - strand at 424.302 kb on - strand at 424.302 kb on - strand at 424.347 kb on + strand at 424.348 kb on - strand at 424.348 kb on - strand at 424.348 kb on - strand at 424.418 kb on + strand at 424.418 kb on + strand at 424.419 kb on - strand at 424.419 kb on - strand at 424.419 kb on - strand at 424.584 kb on + strand, within PfGW456L13_365 at 424.585 kb on - strand, within PfGW456L13_365 at 424.585 kb on - strand, within PfGW456L13_365 at 424.585 kb on - strand, within PfGW456L13_365 at 424.585 kb on - strand, within PfGW456L13_365 at 424.585 kb on - strand, within PfGW456L13_365 at 424.641 kb on + strand, within PfGW456L13_365 at 424.641 kb on + strand, within PfGW456L13_365 at 424.641 kb on + strand, within PfGW456L13_365 at 424.641 kb on + strand, within PfGW456L13_365 at 424.641 kb on + strand, within PfGW456L13_365 at 424.641 kb on + strand, within PfGW456L13_365 at 424.641 kb on + strand, within PfGW456L13_365 at 424.641 kb on + strand, within PfGW456L13_365 at 424.642 kb on - strand, within PfGW456L13_365 at 424.642 kb on - strand, within PfGW456L13_365 at 424.642 kb on - strand, within PfGW456L13_365 at 424.642 kb on - strand, within PfGW456L13_365 at 424.642 kb on - strand, within PfGW456L13_365 at 424.842 kb on + strand, within PfGW456L13_365 at 424.842 kb on + strand, within PfGW456L13_365 at 424.862 kb on + strand, within PfGW456L13_365 at 424.903 kb on + strand, within PfGW456L13_365 at 424.903 kb on + strand, within PfGW456L13_365 at 425.297 kb on - strand, within PfGW456L13_365 at 425.511 kb on - strand, within PfGW456L13_365 at 425.743 kb on + strand, within PfGW456L13_365 at 425.810 kb on + strand, within PfGW456L13_365 at 425.810 kb on + strand, within PfGW456L13_365 at 425.810 kb on + strand, within PfGW456L13_365 at 425.811 kb on - strand, within PfGW456L13_365 at 426.179 kb on - strand, within PfGW456L13_365 at 426.694 kb on + strand, within PfGW456L13_366 at 426.695 kb on - strand, within PfGW456L13_366 at 426.788 kb on - strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.790 kb on + strand, within PfGW456L13_366 at 426.791 kb on - strand, within PfGW456L13_366 at 427.082 kb on - strand, within PfGW456L13_366 at 427.082 kb on - strand, within PfGW456L13_366 at 427.286 kb on - strand, within PfGW456L13_366 at 427.514 kb on - strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.515 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 423,317 + PfGW456L13_363 0.83 -3.7 423,317 + PfGW456L13_363 0.83 -1.9 423,318 - PfGW456L13_363 0.83 +1.3 423,318 - PfGW456L13_363 0.83 +0.8 423,318 - PfGW456L13_363 0.83 -0.0 423,318 - PfGW456L13_363 0.83 +0.9 423,318 - PfGW456L13_363 0.83 -0.6 423,458 + +3.2 423,459 - +0.6 423,608 + -1.2 423,608 + -1.0 423,608 + +1.2 423,609 - -3.4 423,609 - +1.4 423,619 + +1.0 423,619 + +0.7 423,619 + -0.1 423,619 + -0.7 423,619 + +0.0 423,620 - -0.5 423,620 - -2.3 423,620 - -0.8 423,620 - +0.5 423,620 - +0.5 423,659 + -0.2 423,660 - -3.6 423,660 - -0.3 423,687 - -0.3 423,743 + +0.3 423,743 + +1.1 423,744 - +0.1 423,744 - +0.9 423,744 - -1.7 423,899 + PfGW456L13_364 0.16 +1.1 423,899 + PfGW456L13_364 0.16 +1.2 423,899 + PfGW456L13_364 0.16 +1.8 423,900 - PfGW456L13_364 0.17 +1.4 423,900 - PfGW456L13_364 0.17 +1.7 423,900 - PfGW456L13_364 0.17 +1.8 424,062 + PfGW456L13_364 0.57 +2.0 424,062 + PfGW456L13_364 0.57 +2.5 424,062 + PfGW456L13_364 0.57 -2.8 424,063 - PfGW456L13_364 0.57 -2.8 424,063 - PfGW456L13_364 0.57 -2.5 424,063 - PfGW456L13_364 0.57 +0.4 424,063 - PfGW456L13_364 0.57 +0.0 424,063 - PfGW456L13_364 0.57 +1.8 424,063 - PfGW456L13_364 0.57 -1.4 424,063 - PfGW456L13_364 0.57 -4.0 424,267 + -1.8 424,267 + +0.2 424,267 + -0.4 424,268 - -0.5 424,268 - +1.1 424,268 - +1.0 424,268 - +0.7 424,269 + -2.2 424,269 + -0.3 424,269 + +1.6 424,269 + -0.3 424,269 + -0.8 424,270 - +1.5 424,270 - +0.8 424,270 - -0.8 424,270 - -4.0 424,270 - -0.4 424,270 - +2.1 424,270 - +0.5 424,270 - -1.0 424,270 - +0.8 424,270 - +1.0 424,270 - +0.9 424,297 + +0.4 424,301 + -0.2 424,301 + +1.4 424,301 + -3.4 424,301 + +0.0 424,301 + -2.2 424,302 - -1.6 424,302 - +0.8 424,302 - +1.2 424,302 - +0.3 424,302 - -3.2 424,302 - -0.6 424,302 - +0.2 424,347 + +0.5 424,348 - +1.3 424,348 - +1.4 424,348 - +0.3 424,418 + +0.8 424,418 + -1.0 424,419 - +1.3 424,419 - +1.1 424,419 - +1.9 424,584 + PfGW456L13_365 0.12 -3.6 424,585 - PfGW456L13_365 0.12 -1.1 424,585 - PfGW456L13_365 0.12 +0.2 424,585 - PfGW456L13_365 0.12 -1.6 424,585 - PfGW456L13_365 0.12 +0.1 424,585 - PfGW456L13_365 0.12 -1.4 424,641 + PfGW456L13_365 0.15 +0.8 424,641 + PfGW456L13_365 0.15 +1.1 424,641 + PfGW456L13_365 0.15 +0.2 424,641 + PfGW456L13_365 0.15 -0.1 424,641 + PfGW456L13_365 0.15 +0.1 424,641 + PfGW456L13_365 0.15 +0.5 424,641 + PfGW456L13_365 0.15 -0.9 424,641 + PfGW456L13_365 0.15 -2.4 424,642 - PfGW456L13_365 0.15 -0.5 424,642 - PfGW456L13_365 0.15 -3.6 424,642 - PfGW456L13_365 0.15 +0.5 424,642 - PfGW456L13_365 0.15 +0.5 424,642 - PfGW456L13_365 0.15 -0.1 424,842 + PfGW456L13_365 0.24 +0.1 424,842 + PfGW456L13_365 0.24 +0.6 424,862 + PfGW456L13_365 0.24 -3.2 424,903 + PfGW456L13_365 0.26 -1.1 424,903 + PfGW456L13_365 0.26 +0.8 425,297 - PfGW456L13_365 0.44 -3.7 425,511 - PfGW456L13_365 0.54 +0.6 425,743 + PfGW456L13_365 0.64 -0.4 425,810 + PfGW456L13_365 0.67 +2.0 425,810 + PfGW456L13_365 0.67 -0.1 425,810 + PfGW456L13_365 0.67 -1.1 425,811 - PfGW456L13_365 0.67 +1.7 426,179 - PfGW456L13_365 0.83 +0.7 426,694 + PfGW456L13_366 0.14 -3.7 426,695 - PfGW456L13_366 0.14 +0.8 426,788 - PfGW456L13_366 0.23 +1.7 426,790 + PfGW456L13_366 0.23 +0.5 426,790 + PfGW456L13_366 0.23 +2.5 426,790 + PfGW456L13_366 0.23 +1.1 426,790 + PfGW456L13_366 0.23 -1.5 426,790 + PfGW456L13_366 0.23 +0.5 426,791 - PfGW456L13_366 0.23 +1.3 427,082 - PfGW456L13_366 0.50 -0.9 427,082 - PfGW456L13_366 0.50 +0.4 427,286 - PfGW456L13_366 0.69 +0.9 427,514 - -1.4 427,515 + +0.2 427,515 + -2.9 427,515 + +1.3 427,515 + -2.4
Or see this region's nucleotide sequence