Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3008

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
3,350,845	+		PfGW456L13_3007	0.29	-0.0
3,350,845	+		PfGW456L13_3007	0.29	-0.7
3,350,845	+		PfGW456L13_3007	0.29	-2.5
3,350,845	+		PfGW456L13_3007	0.29	-1.9
3,350,845	+		PfGW456L13_3007	0.29	+1.0
3,350,845	+		PfGW456L13_3007	0.29	+0.8
3,350,845	+		PfGW456L13_3007	0.29	+0.5
3,350,846	-		PfGW456L13_3007	0.29	-0.3
3,350,846	-		PfGW456L13_3007	0.29	-1.4
3,350,846	-		PfGW456L13_3007	0.29	-0.4
3,350,846	-		PfGW456L13_3007	0.29	+1.7
3,350,852	-				-0.8
3,350,852	-		PfGW456L13_3007	0.29	+0.1
3,350,937	-		PfGW456L13_3007	0.36	-0.5
3,350,969	+		PfGW456L13_3007	0.39	+0.4
3,351,105	+		PfGW456L13_3007	0.50	+1.2
3,351,106	-		PfGW456L13_3007	0.50	-3.5
3,351,106	-		PfGW456L13_3007	0.50	-1.8
3,351,179	-		PfGW456L13_3007	0.56	+1.6
3,351,193	+		PfGW456L13_3007	0.57	-2.6
3,351,194	-		PfGW456L13_3007	0.57	+0.4
3,351,242	-		PfGW456L13_3007	0.61	-0.0
3,351,242	-		PfGW456L13_3007	0.61	+0.6
3,351,297	-		PfGW456L13_3007	0.65	-2.6
3,351,367	+		PfGW456L13_3007	0.71	+0.4
3,351,367	+		PfGW456L13_3007	0.71	-0.3
3,351,368	-		PfGW456L13_3007	0.71	+0.2
3,351,368	-		PfGW456L13_3007	0.71	-0.4
3,351,368	-		PfGW456L13_3007	0.71	-1.2
3,351,427	+		PfGW456L13_3007	0.76	+1.8
3,351,428	-		PfGW456L13_3007	0.76	-2.4
3,351,428	-		PfGW456L13_3007	0.76	+0.5
3,351,428	-		PfGW456L13_3007	0.76	+0.7
3,351,481	+		PfGW456L13_3007	0.80	+1.2
3,351,481	+		PfGW456L13_3007	0.80	-0.0
3,351,481	+		PfGW456L13_3007	0.80	-0.1
3,351,482	-		PfGW456L13_3007	0.80	-1.2
3,351,482	-		PfGW456L13_3007	0.80	-2.4
3,351,645	+				-0.2
3,351,645	+				-3.6
3,351,645	+				-2.0
3,351,649	+				-2.8
3,351,652	+				+0.3
3,351,736	-				+1.2
3,351,769	-				-2.6
3,351,779	-				+0.2
3,351,787	+				-3.7
3,351,787	+				-0.3
3,351,787	+				+0.8
3,351,787	+				-0.6
3,351,788	-				-1.4
3,351,788	-				-3.5
3,351,788	-				+0.8
3,351,826	-				+1.4
3,351,826	-				+2.2
3,351,826	-				+0.2
3,351,826	-				-0.9
3,351,900	+				+0.1
3,351,901	-				+1.3
3,351,901	-				-0.6
3,351,913	+		PfGW456L13_3008	0.11	+0.2
3,351,913	+		PfGW456L13_3008	0.11	+1.1
3,351,913	+		PfGW456L13_3008	0.11	+1.3
3,351,913	+		PfGW456L13_3008	0.11	+0.4
3,351,913	+		PfGW456L13_3008	0.11	-2.8
3,351,914	-		PfGW456L13_3008	0.11	-1.4
3,351,914	-		PfGW456L13_3008	0.11	-2.4
3,351,914	-		PfGW456L13_3008	0.11	-1.6
3,351,914	-		PfGW456L13_3008	0.11	-2.2
3,351,914	-		PfGW456L13_3008	0.11	+0.2
3,352,228	+		PfGW456L13_3008	0.54	-2.9
3,352,325	+		PfGW456L13_3008	0.67	-2.9
3,352,326	-		PfGW456L13_3008	0.67	+0.5
3,352,326	-		PfGW456L13_3008	0.67	-1.0
3,352,326	-		PfGW456L13_3008	0.67	-0.9
3,352,326	-		PfGW456L13_3008	0.67	-1.5
3,352,326	-		PfGW456L13_3008	0.67	+1.8
3,352,326	-		PfGW456L13_3008	0.67	-0.2
3,352,326	-		PfGW456L13_3008	0.67	-0.5
3,352,408	-		PfGW456L13_3008	0.78	+0.3
3,352,408	-		PfGW456L13_3008	0.78	+0.1
3,352,454	+		PfGW456L13_3008	0.84	-0.8
3,352,455	-		PfGW456L13_3008	0.84	+0.8
3,352,455	-		PfGW456L13_3008	0.84	-0.0
3,352,560	-				+1.1
3,352,600	+				+1.0
3,352,601	-				+0.0
3,352,635	+				-0.1
3,352,635	+				+1.2
3,352,636	-				+0.9
3,352,636	-				-2.2
3,352,682	+				-3.7
3,352,745	-		PfGW456L13_3009	0.19	+0.6
3,352,770	-		PfGW456L13_3009	0.22	-2.4
3,352,770	-		PfGW456L13_3009	0.22	+1.4
3,352,770	-		PfGW456L13_3009	0.22	-1.6
3,352,808	-		PfGW456L13_3009	0.28	-2.2
3,352,838	+		PfGW456L13_3009	0.32	-1.5
3,352,840	+		PfGW456L13_3009	0.33	-1.2
3,352,840	+		PfGW456L13_3009	0.33	-0.3
3,352,840	+		PfGW456L13_3009	0.33	+0.3
3,352,840	+		PfGW456L13_3009	0.33	+0.2
3,352,841	-		PfGW456L13_3009	0.33	-4.0
3,352,841	-		PfGW456L13_3009	0.33	-2.9
3,352,841	-		PfGW456L13_3009	0.33	-1.6
3,352,841	-		PfGW456L13_3009	0.33	-3.6
3,352,841	-		PfGW456L13_3009	0.33	-3.1
3,352,841	-		PfGW456L13_3009	0.33	-0.1
3,352,841	-		PfGW456L13_3009	0.33	+1.0
3,352,905	+		PfGW456L13_3009	0.42	+0.4
3,352,905	+		PfGW456L13_3009	0.42	+0.2
3,352,906	-		PfGW456L13_3009	0.42	+0.9
3,352,983	+		PfGW456L13_3009	0.54	-0.1
3,352,983	+		PfGW456L13_3009	0.54	-0.7
3,352,983	+		PfGW456L13_3009	0.54	+0.5
3,352,984	-		PfGW456L13_3009	0.54	-2.6
3,352,984	-		PfGW456L13_3009	0.54	+0.5
3,352,984	-		PfGW456L13_3009	0.54	+0.5
3,352,984	-		PfGW456L13_3009	0.54	-1.5
3,352,984	-		PfGW456L13_3009	0.54	-2.6
3,353,092	+		PfGW456L13_3009	0.70	-0.2
3,353,190	+		PfGW456L13_3009	0.84	+1.7
3,353,190	+		PfGW456L13_3009	0.84	+0.1
3,353,190	+		PfGW456L13_3009	0.84	-2.4
3,353,190	+		PfGW456L13_3009	0.84	-0.7
3,353,191	-		PfGW456L13_3009	0.84	-3.0
3,353,191	-		PfGW456L13_3009	0.84	-0.4
3,353,191	-		PfGW456L13_3009	0.84	-1.0
3,353,191	-		PfGW456L13_3009	0.84	-0.2
3,353,191	-		PfGW456L13_3009	0.84	+1.5
3,353,191	-		PfGW456L13_3009	0.84	-1.5
3,353,200	+		PfGW456L13_3009	0.86	-0.4
3,353,200	+		PfGW456L13_3009	0.86	+2.7
3,353,200	+		PfGW456L13_3009	0.86	-0.0
3,353,201	-		PfGW456L13_3009	0.86	-3.1
3,353,201	-		PfGW456L13_3009	0.86	+1.7
3,353,201	-		PfGW456L13_3009	0.86	-0.6
3,353,291	+				+0.8
3,353,291	+				+1.4
3,353,291	+				-0.4
3,353,292	-				+0.2
3,353,292	-				+0.3
3,353,292	-				+1.7
3,353,361	-				+0.6
3,353,428	+				+2.0
3,353,428	+				+2.1
3,353,428	+				+0.1
3,353,428	+				-1.8
3,353,428	+				+1.9
3,353,428	+				+0.3
3,353,429	-				+0.6
3,353,429	-				-3.5
3,353,429	-				+1.5
3,353,429	-				+0.3
3,353,429	-				+1.0
3,353,536	+		PfGW456L13_3010	0.22	-0.6
3,353,536	+		PfGW456L13_3010	0.22	+2.1
3,353,537	-		PfGW456L13_3010	0.22	-1.2
3,353,555	-		PfGW456L13_3010	0.24	-1.4