Strain Fitness in Pseudomonas sp. RS175 around PFR28_04534

Experiment: Xanthosine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04533 and PFR28_04534 are separated by 633 nucleotidesPFR28_04534 and PFR28_04535 overlap by 4 nucleotidesPFR28_04535 and PFR28_04536 are separated by 47 nucleotides PFR28_04533: PFR28_04533 - Putative metal chaperone YciC, at 5,175,025 to 5,176,233 _04533 PFR28_04534: PFR28_04534 - GTP cyclohydrolase FolE2, at 5,176,867 to 5,177,763 _04534 PFR28_04535: PFR28_04535 - Manganese import ATP-binding protein ScaC, at 5,177,760 to 5,178,428 _04535 PFR28_04536: PFR28_04536 - Manganese transport system membrane protein MntC, at 5,178,476 to 5,179,294 _04536 Position (kb) 5176 5177 5178Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5175.870 kb on + strand, within PFR28_04533at 5175.870 kb on + strand, within PFR28_04533at 5175.871 kb on - strand, within PFR28_04533at 5175.871 kb on - strand, within PFR28_04533at 5176.020 kb on + strand, within PFR28_04533at 5176.021 kb on - strand, within PFR28_04533at 5176.021 kb on - strand, within PFR28_04533at 5176.113 kb on + strandat 5176.114 kb on - strandat 5176.114 kb on - strandat 5176.176 kb on + strandat 5176.177 kb on - strandat 5176.177 kb on - strandat 5176.240 kb on + strandat 5176.240 kb on + strandat 5176.240 kb on + strandat 5176.240 kb on + strandat 5176.240 kb on + strandat 5176.240 kb on + strandat 5176.241 kb on - strandat 5176.241 kb on - strandat 5176.326 kb on + strandat 5176.326 kb on + strandat 5176.327 kb on - strandat 5176.384 kb on + strandat 5176.384 kb on + strandat 5176.466 kb on + strandat 5176.505 kb on + strandat 5176.506 kb on - strandat 5176.506 kb on - strandat 5176.509 kb on + strandat 5176.509 kb on + strandat 5176.509 kb on + strandat 5176.509 kb on + strandat 5176.509 kb on + strandat 5176.509 kb on + strandat 5176.509 kb on + strandat 5176.509 kb on + strandat 5176.510 kb on - strandat 5176.510 kb on - strandat 5176.510 kb on - strandat 5176.510 kb on - strandat 5176.533 kb on - strandat 5176.539 kb on + strandat 5176.539 kb on + strandat 5176.540 kb on - strandat 5176.540 kb on - strandat 5176.597 kb on - strandat 5176.724 kb on - strandat 5176.724 kb on - strandat 5176.784 kb on + strandat 5176.785 kb on - strandat 5176.792 kb on + strandat 5176.793 kb on - strandat 5176.861 kb on + strandat 5176.861 kb on + strandat 5176.861 kb on + strandat 5176.862 kb on - strandat 5177.054 kb on - strand, within PFR28_04534at 5177.054 kb on - strand, within PFR28_04534at 5177.054 kb on - strand, within PFR28_04534at 5177.054 kb on - strand, within PFR28_04534at 5177.183 kb on + strand, within PFR28_04534at 5177.184 kb on - strand, within PFR28_04534at 5177.300 kb on - strand, within PFR28_04534at 5177.307 kb on + strand, within PFR28_04534at 5177.307 kb on + strand, within PFR28_04534at 5177.307 kb on + strand, within PFR28_04534at 5177.308 kb on - strand, within PFR28_04534at 5177.308 kb on - strand, within PFR28_04534at 5177.308 kb on - strand, within PFR28_04534at 5177.308 kb on - strand, within PFR28_04534at 5177.308 kb on - strand, within PFR28_04534at 5177.308 kb on - strand, within PFR28_04534at 5177.308 kb on - strand, within PFR28_04534at 5177.308 kb on - strand, within PFR28_04534at 5177.376 kb on + strand, within PFR28_04534at 5177.377 kb on - strand, within PFR28_04534at 5177.377 kb on - strand, within PFR28_04534at 5177.377 kb on - strand, within PFR28_04534at 5177.474 kb on + strand, within PFR28_04534at 5177.474 kb on + strand, within PFR28_04534at 5177.474 kb on + strand, within PFR28_04534at 5177.474 kb on + strand, within PFR28_04534at 5177.474 kb on + strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.475 kb on - strand, within PFR28_04534at 5177.485 kb on - strand, within PFR28_04534at 5178.048 kb on - strand, within PFR28_04535at 5178.048 kb on - strand, within PFR28_04535at 5178.202 kb on + strand, within PFR28_04535at 5178.202 kb on + strand, within PFR28_04535at 5178.202 kb on + strand, within PFR28_04535at 5178.202 kb on + strand, within PFR28_04535at 5178.202 kb on + strand, within PFR28_04535at 5178.203 kb on - strand, within PFR28_04535at 5178.203 kb on - strand, within PFR28_04535at 5178.203 kb on - strand, within PFR28_04535at 5178.203 kb on - strand, within PFR28_04535at 5178.298 kb on + strand, within PFR28_04535at 5178.299 kb on - strand, within PFR28_04535at 5178.335 kb on + strand, within PFR28_04535at 5178.335 kb on + strand, within PFR28_04535at 5178.335 kb on + strand, within PFR28_04535at 5178.335 kb on + strand, within PFR28_04535at 5178.335 kb on + strand, within PFR28_04535at 5178.335 kb on + strand, within PFR28_04535at 5178.335 kb on + strand, within PFR28_04535at 5178.335 kb on + strand, within PFR28_04535at 5178.335 kb on + strand, within PFR28_04535at 5178.336 kb on - strand, within PFR28_04535at 5178.336 kb on - strand, within PFR28_04535at 5178.336 kb on - strand, within PFR28_04535at 5178.336 kb on - strand, within PFR28_04535at 5178.344 kb on + strand, within PFR28_04535at 5178.344 kb on + strand, within PFR28_04535at 5178.344 kb on + strand, within PFR28_04535at 5178.345 kb on - strand, within PFR28_04535at 5178.345 kb on - strand, within PFR28_04535at 5178.345 kb on - strand, within PFR28_04535at 5178.345 kb on - strand, within PFR28_04535at 5178.345 kb on - strand, within PFR28_04535at 5178.345 kb on - strand, within PFR28_04535at 5178.743 kb on + strand, within PFR28_04536at 5178.743 kb on + strand, within PFR28_04536at 5178.744 kb on - strand, within PFR28_04536

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine (C) 10 mM
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5,175,870 + PFR28_04533 0.70 +0.7
5,175,870 + PFR28_04533 0.70 +0.7
5,175,871 - PFR28_04533 0.70 +0.5
5,175,871 - PFR28_04533 0.70 +1.7
5,176,020 + PFR28_04533 0.82 -0.4
5,176,021 - PFR28_04533 0.82 -0.8
5,176,021 - PFR28_04533 0.82 -0.4
5,176,113 + +0.5
5,176,114 - -0.6
5,176,114 - -1.0
5,176,176 + +0.3
5,176,177 - +0.1
5,176,177 - -0.1
5,176,240 + -0.9
5,176,240 + -1.0
5,176,240 + +2.2
5,176,240 + +0.4
5,176,240 + -0.5
5,176,240 + -0.1
5,176,241 - -0.2
5,176,241 - -1.3
5,176,326 + +0.5
5,176,326 + +1.8
5,176,327 - -0.7
5,176,384 + -0.4
5,176,384 + -0.1
5,176,466 + +0.1
5,176,505 + -1.2
5,176,506 - +0.7
5,176,506 - +0.6
5,176,509 + +0.5
5,176,509 + +0.1
5,176,509 + -1.6
5,176,509 + +1.5
5,176,509 + -0.1
5,176,509 + -0.1
5,176,509 + +0.1
5,176,509 + +0.3
5,176,510 - +0.9
5,176,510 - +0.8
5,176,510 - -2.9
5,176,510 - +0.1
5,176,533 - -0.6
5,176,539 + +0.8
5,176,539 + +0.0
5,176,540 - -0.2
5,176,540 - -0.3
5,176,597 - -0.3
5,176,724 - +0.9
5,176,724 - +0.0
5,176,784 + -0.2
5,176,785 - -0.1
5,176,792 + -0.3
5,176,793 - +0.3
5,176,861 + +0.9
5,176,861 + +0.3
5,176,861 + -0.7
5,176,862 - +0.7
5,177,054 - PFR28_04534 0.21 -0.3
5,177,054 - PFR28_04534 0.21 +0.7
5,177,054 - PFR28_04534 0.21 -0.7
5,177,054 - PFR28_04534 0.21 +0.3
5,177,183 + PFR28_04534 0.35 -0.0
5,177,184 - PFR28_04534 0.35 +1.3
5,177,300 - PFR28_04534 0.48 +0.4
5,177,307 + PFR28_04534 0.49 +0.1
5,177,307 + PFR28_04534 0.49 -1.0
5,177,307 + PFR28_04534 0.49 -0.1
5,177,308 - PFR28_04534 0.49 -0.3
5,177,308 - PFR28_04534 0.49 +0.6
5,177,308 - PFR28_04534 0.49 +0.8
5,177,308 - PFR28_04534 0.49 +0.5
5,177,308 - PFR28_04534 0.49 -0.4
5,177,308 - PFR28_04534 0.49 +0.3
5,177,308 - PFR28_04534 0.49 -0.2
5,177,308 - PFR28_04534 0.49 -0.5
5,177,376 + PFR28_04534 0.57 +0.3
5,177,377 - PFR28_04534 0.57 -0.0
5,177,377 - PFR28_04534 0.57 +0.1
5,177,377 - PFR28_04534 0.57 -0.4
5,177,474 + PFR28_04534 0.68 +0.1
5,177,474 + PFR28_04534 0.68 -2.0
5,177,474 + PFR28_04534 0.68 -0.0
5,177,474 + PFR28_04534 0.68 +0.0
5,177,474 + PFR28_04534 0.68 -0.8
5,177,475 - PFR28_04534 0.68 -0.2
5,177,475 - PFR28_04534 0.68 +0.1
5,177,475 - PFR28_04534 0.68 +0.1
5,177,475 - PFR28_04534 0.68 -0.1
5,177,475 - PFR28_04534 0.68 +0.1
5,177,475 - PFR28_04534 0.68 -0.5
5,177,475 - PFR28_04534 0.68 +0.6
5,177,475 - PFR28_04534 0.68 +0.2
5,177,475 - PFR28_04534 0.68 +1.7
5,177,475 - PFR28_04534 0.68 +0.8
5,177,475 - PFR28_04534 0.68 -0.6
5,177,475 - PFR28_04534 0.68 +0.0
5,177,485 - PFR28_04534 0.69 -1.4
5,178,048 - PFR28_04535 0.43 -0.1
5,178,048 - PFR28_04535 0.43 -0.3
5,178,202 + PFR28_04535 0.66 -0.0
5,178,202 + PFR28_04535 0.66 +0.4
5,178,202 + PFR28_04535 0.66 -0.1
5,178,202 + PFR28_04535 0.66 -1.0
5,178,202 + PFR28_04535 0.66 -0.4
5,178,203 - PFR28_04535 0.66 +0.0
5,178,203 - PFR28_04535 0.66 +0.5
5,178,203 - PFR28_04535 0.66 -0.0
5,178,203 - PFR28_04535 0.66 -0.1
5,178,298 + PFR28_04535 0.80 +0.5
5,178,299 - PFR28_04535 0.81 -1.3
5,178,335 + PFR28_04535 0.86 -0.2
5,178,335 + PFR28_04535 0.86 +0.7
5,178,335 + PFR28_04535 0.86 +0.9
5,178,335 + PFR28_04535 0.86 -0.5
5,178,335 + PFR28_04535 0.86 -0.8
5,178,335 + PFR28_04535 0.86 +1.2
5,178,335 + PFR28_04535 0.86 -1.2
5,178,335 + PFR28_04535 0.86 +0.2
5,178,335 + PFR28_04535 0.86 +0.4
5,178,336 - PFR28_04535 0.86 -0.0
5,178,336 - PFR28_04535 0.86 -0.6
5,178,336 - PFR28_04535 0.86 -0.8
5,178,336 - PFR28_04535 0.86 -1.4
5,178,344 + PFR28_04535 0.87 -0.7
5,178,344 + PFR28_04535 0.87 -0.3
5,178,344 + PFR28_04535 0.87 -0.1
5,178,345 - PFR28_04535 0.87 +1.5
5,178,345 - PFR28_04535 0.87 +0.1
5,178,345 - PFR28_04535 0.87 -1.0
5,178,345 - PFR28_04535 0.87 +0.3
5,178,345 - PFR28_04535 0.87 -0.1
5,178,345 - PFR28_04535 0.87 -0.8
5,178,743 + PFR28_04536 0.33 +0.3
5,178,743 + PFR28_04536 0.33 -1.3
5,178,744 - PFR28_04536 0.33 +0.1

Or see this region's nucleotide sequence