Strain Fitness in Pseudomonas sp. RS175 around PFR28_01181

Experiment: Xanthosine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01179 and PFR28_01180 overlap by 4 nucleotidesPFR28_01180 and PFR28_01181 overlap by 4 nucleotidesPFR28_01181 and PFR28_01182 are separated by 45 nucleotidesPFR28_01182 and PFR28_01183 overlap by 1 nucleotidesPFR28_01183 and PFR28_01184 are separated by 104 nucleotides PFR28_01179: PFR28_01179 - hypothetical protein, at 1,291,357 to 1,291,563 _01179 PFR28_01180: PFR28_01180 - hypothetical protein, at 1,291,560 to 1,292,402 _01180 PFR28_01181: PFR28_01181 - hypothetical protein, at 1,292,399 to 1,292,722 _01181 PFR28_01182: PFR28_01182 - hypothetical protein, at 1,292,768 to 1,292,980 _01182 PFR28_01183: PFR28_01183 - hypothetical protein, at 1,292,980 to 1,293,441 _01183 PFR28_01184: PFR28_01184 - hypothetical protein, at 1,293,546 to 1,294,244 _01184 Position (kb) 1292 1293Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1291.429 kb on + strand, within PFR28_01179at 1291.449 kb on + strand, within PFR28_01179at 1291.449 kb on + strand, within PFR28_01179at 1291.450 kb on - strand, within PFR28_01179at 1291.450 kb on - strand, within PFR28_01179at 1291.450 kb on - strand, within PFR28_01179at 1291.450 kb on - strand, within PFR28_01179at 1291.451 kb on + strand, within PFR28_01179at 1291.451 kb on + strand, within PFR28_01179at 1291.451 kb on + strand, within PFR28_01179at 1291.451 kb on + strand, within PFR28_01179at 1291.452 kb on - strand, within PFR28_01179at 1291.452 kb on - strand, within PFR28_01179at 1291.494 kb on + strand, within PFR28_01179at 1291.495 kb on - strand, within PFR28_01179at 1291.607 kb on - strandat 1291.607 kb on - strandat 1291.660 kb on + strand, within PFR28_01180at 1291.660 kb on + strand, within PFR28_01180at 1291.660 kb on + strand, within PFR28_01180at 1291.661 kb on - strand, within PFR28_01180at 1291.686 kb on - strand, within PFR28_01180at 1291.927 kb on + strand, within PFR28_01180at 1291.927 kb on + strand, within PFR28_01180at 1292.041 kb on + strand, within PFR28_01180at 1292.042 kb on - strand, within PFR28_01180at 1292.042 kb on - strand, within PFR28_01180at 1292.272 kb on + strand, within PFR28_01180at 1292.273 kb on - strand, within PFR28_01180at 1292.402 kb on + strandat 1292.402 kb on + strandat 1292.411 kb on + strandat 1292.411 kb on + strandat 1292.411 kb on + strandat 1292.411 kb on + strandat 1292.412 kb on - strandat 1292.412 kb on - strandat 1292.412 kb on - strandat 1292.462 kb on + strand, within PFR28_01181at 1292.463 kb on - strand, within PFR28_01181at 1292.475 kb on - strand, within PFR28_01181at 1292.602 kb on - strand, within PFR28_01181at 1292.602 kb on - strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.647 kb on - strand, within PFR28_01181at 1292.648 kb on + strand, within PFR28_01181at 1292.741 kb on + strandat 1292.742 kb on - strandat 1292.778 kb on - strandat 1292.778 kb on - strandat 1292.919 kb on + strand, within PFR28_01182at 1292.920 kb on - strand, within PFR28_01182at 1292.986 kb on + strandat 1292.987 kb on - strandat 1292.987 kb on - strandat 1293.051 kb on - strand, within PFR28_01183at 1293.399 kb on + strandat 1293.400 kb on - strandat 1293.400 kb on - strandat 1293.459 kb on + strandat 1293.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine (C) 10 mM
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1,291,429 + PFR28_01179 0.35 +1.0
1,291,449 + PFR28_01179 0.44 -0.0
1,291,449 + PFR28_01179 0.44 +0.5
1,291,450 - PFR28_01179 0.45 -0.1
1,291,450 - PFR28_01179 0.45 -2.2
1,291,450 - PFR28_01179 0.45 +0.9
1,291,450 - PFR28_01179 0.45 +0.9
1,291,451 + PFR28_01179 0.45 +3.1
1,291,451 + PFR28_01179 0.45 +0.0
1,291,451 + PFR28_01179 0.45 -1.0
1,291,451 + PFR28_01179 0.45 +0.3
1,291,452 - PFR28_01179 0.46 -1.8
1,291,452 - PFR28_01179 0.46 +1.0
1,291,494 + PFR28_01179 0.66 +0.9
1,291,495 - PFR28_01179 0.67 -2.3
1,291,607 - -1.3
1,291,607 - +0.3
1,291,660 + PFR28_01180 0.12 -0.1
1,291,660 + PFR28_01180 0.12 +0.0
1,291,660 + PFR28_01180 0.12 +0.4
1,291,661 - PFR28_01180 0.12 +0.3
1,291,686 - PFR28_01180 0.15 -1.4
1,291,927 + PFR28_01180 0.44 +0.7
1,291,927 + PFR28_01180 0.44 +0.7
1,292,041 + PFR28_01180 0.57 -1.1
1,292,042 - PFR28_01180 0.57 +0.5
1,292,042 - PFR28_01180 0.57 +0.1
1,292,272 + PFR28_01180 0.84 +0.7
1,292,273 - PFR28_01180 0.85 -2.3
1,292,402 + +3.6
1,292,402 + -0.1
1,292,411 + +0.3
1,292,411 + +3.3
1,292,411 + +0.3
1,292,411 + +1.6
1,292,412 - +2.0
1,292,412 - +1.1
1,292,412 - +1.1
1,292,462 + PFR28_01181 0.19 +1.6
1,292,463 - PFR28_01181 0.20 +1.6
1,292,475 - PFR28_01181 0.23 +1.2
1,292,602 - PFR28_01181 0.63 +2.3
1,292,602 - PFR28_01181 0.63 +1.6
1,292,646 + PFR28_01181 0.76 +1.1
1,292,646 + PFR28_01181 0.76 +2.9
1,292,646 + PFR28_01181 0.76 +2.2
1,292,646 + PFR28_01181 0.76 -1.3
1,292,647 - PFR28_01181 0.77 +1.2
1,292,648 + PFR28_01181 0.77 +1.4
1,292,741 + -0.1
1,292,742 - -1.3
1,292,778 - +0.9
1,292,778 - -0.0
1,292,919 + PFR28_01182 0.71 -0.7
1,292,920 - PFR28_01182 0.71 +0.3
1,292,986 + +1.0
1,292,987 - +1.0
1,292,987 - +0.7
1,293,051 - PFR28_01183 0.15 +2.5
1,293,399 + +1.9
1,293,400 - +2.2
1,293,400 - -0.5
1,293,459 + +0.8
1,293,460 - +1.8

Or see this region's nucleotide sequence