Strain Fitness in Pseudomonas sp. RS175 around PFR28_00560

Experiment: Xanthosine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00558 and PFR28_00559 are separated by 119 nucleotidesPFR28_00559 and PFR28_00560 are separated by 234 nucleotidesPFR28_00560 and PFR28_00561 are separated by 219 nucleotides PFR28_00558: PFR28_00558 - hypothetical protein, at 596,613 to 597,575 _00558 PFR28_00559: PFR28_00559 - ECF RNA polymerase sigma factor SigE, at 597,695 to 598,213 _00559 PFR28_00560: PFR28_00560 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 598,448 to 599,449 _00560 PFR28_00561: PFR28_00561 - Phosphogluconate dehydratase, at 599,669 to 601,495 _00561 Position (kb) 598 599 600Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 597.613 kb on - strandat 597.637 kb on - strandat 597.688 kb on + strandat 597.688 kb on + strandat 597.689 kb on - strandat 597.766 kb on + strand, within PFR28_00559at 597.766 kb on + strand, within PFR28_00559at 597.767 kb on - strand, within PFR28_00559at 597.804 kb on + strand, within PFR28_00559at 598.067 kb on - strand, within PFR28_00559at 598.098 kb on + strand, within PFR28_00559at 598.098 kb on + strand, within PFR28_00559at 598.098 kb on + strand, within PFR28_00559at 598.099 kb on - strand, within PFR28_00559at 598.144 kb on + strand, within PFR28_00559at 598.144 kb on + strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.171 kb on + strandat 598.171 kb on + strandat 598.171 kb on + strandat 598.172 kb on - strandat 598.251 kb on + strandat 598.406 kb on + strandat 598.406 kb on + strandat 598.406 kb on + strandat 598.406 kb on + strandat 598.406 kb on + strandat 598.407 kb on - strandat 598.407 kb on - strandat 598.477 kb on + strandat 598.478 kb on - strandat 598.515 kb on + strandat 598.515 kb on + strandat 598.516 kb on - strandat 598.526 kb on + strandat 598.526 kb on + strandat 598.526 kb on + strandat 598.527 kb on - strandat 598.624 kb on + strand, within PFR28_00560at 598.624 kb on + strand, within PFR28_00560at 598.625 kb on - strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.718 kb on + strand, within PFR28_00560at 598.719 kb on - strand, within PFR28_00560at 598.858 kb on - strand, within PFR28_00560at 598.872 kb on + strand, within PFR28_00560at 598.873 kb on - strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.114 kb on - strand, within PFR28_00560at 599.114 kb on - strand, within PFR28_00560at 599.373 kb on + strandat 599.383 kb on + strandat 599.383 kb on + strandat 599.384 kb on - strandat 599.384 kb on - strandat 599.385 kb on + strandat 599.385 kb on + strandat 599.385 kb on + strandat 599.385 kb on + strandat 599.386 kb on - strandat 599.386 kb on - strandat 599.386 kb on - strandat 599.386 kb on - strandat 599.450 kb on + strandat 599.482 kb on + strandat 599.483 kb on - strandat 599.540 kb on + strandat 599.541 kb on - strandat 599.544 kb on + strandat 599.544 kb on + strandat 599.626 kb on + strandat 599.626 kb on + strandat 599.626 kb on + strandat 599.627 kb on - strandat 599.627 kb on - strandat 599.627 kb on - strandat 599.664 kb on + strandat 599.664 kb on + strandat 599.664 kb on + strandat 599.664 kb on + strandat 599.664 kb on + strandat 599.735 kb on + strandat 599.888 kb on + strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.990 kb on - strand, within PFR28_00561at 600.258 kb on - strand, within PFR28_00561at 600.311 kb on + strand, within PFR28_00561at 600.338 kb on + strand, within PFR28_00561

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine (C) 10 mM
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597,613 - -1.5
597,637 - +1.5
597,688 + -2.0
597,688 + +1.3
597,689 - +0.2
597,766 + PFR28_00559 0.14 +0.6
597,766 + PFR28_00559 0.14 +0.4
597,767 - PFR28_00559 0.14 +0.9
597,804 + PFR28_00559 0.21 +0.1
598,067 - PFR28_00559 0.72 -1.6
598,098 + PFR28_00559 0.78 +0.9
598,098 + PFR28_00559 0.78 +0.6
598,098 + PFR28_00559 0.78 +0.6
598,099 - PFR28_00559 0.78 +0.9
598,144 + PFR28_00559 0.87 +0.3
598,144 + PFR28_00559 0.87 -0.6
598,145 - PFR28_00559 0.87 +0.4
598,145 - PFR28_00559 0.87 +0.0
598,145 - PFR28_00559 0.87 +0.2
598,145 - PFR28_00559 0.87 -0.7
598,145 - PFR28_00559 0.87 -0.1
598,171 + +1.4
598,171 + +0.7
598,171 + -0.6
598,172 - -0.5
598,251 + -0.3
598,406 + +0.3
598,406 + +0.6
598,406 + +1.3
598,406 + +0.5
598,406 + +1.1
598,407 - +1.8
598,407 - +1.6
598,477 + +0.3
598,478 - +2.4
598,515 + +0.8
598,515 + +1.3
598,516 - +1.3
598,526 + +0.9
598,526 + +1.4
598,526 + +0.8
598,527 - +0.6
598,624 + PFR28_00560 0.18 +0.8
598,624 + PFR28_00560 0.18 +1.2
598,625 - PFR28_00560 0.18 +0.3
598,626 + PFR28_00560 0.18 +1.5
598,626 + PFR28_00560 0.18 +2.1
598,626 + PFR28_00560 0.18 +0.7
598,626 + PFR28_00560 0.18 +0.1
598,626 + PFR28_00560 0.18 +0.2
598,626 + PFR28_00560 0.18 +2.6
598,626 + PFR28_00560 0.18 +1.0
598,626 + PFR28_00560 0.18 +0.2
598,626 + PFR28_00560 0.18 +1.2
598,627 - PFR28_00560 0.18 +1.1
598,627 - PFR28_00560 0.18 +0.7
598,627 - PFR28_00560 0.18 +1.8
598,627 - PFR28_00560 0.18 +1.2
598,627 - PFR28_00560 0.18 +1.4
598,718 + PFR28_00560 0.27 +1.1
598,719 - PFR28_00560 0.27 +0.9
598,858 - PFR28_00560 0.41 +1.5
598,872 + PFR28_00560 0.42 +1.0
598,873 - PFR28_00560 0.42 +1.5
598,902 + PFR28_00560 0.45 +1.6
598,902 + PFR28_00560 0.45 +2.0
598,902 + PFR28_00560 0.45 +0.2
598,902 + PFR28_00560 0.45 +1.3
598,903 - PFR28_00560 0.45 +1.3
598,903 - PFR28_00560 0.45 +1.9
598,903 - PFR28_00560 0.45 +1.7
598,903 - PFR28_00560 0.45 +0.5
598,903 - PFR28_00560 0.45 +1.6
598,903 - PFR28_00560 0.45 +1.2
598,903 - PFR28_00560 0.45 +0.6
599,046 + PFR28_00560 0.60 +1.6
599,046 + PFR28_00560 0.60 +1.2
599,046 + PFR28_00560 0.60 +0.6
599,046 + PFR28_00560 0.60 +0.8
599,046 + PFR28_00560 0.60 -0.4
599,046 + PFR28_00560 0.60 +1.2
599,046 + PFR28_00560 0.60 +0.4
599,047 - PFR28_00560 0.60 +1.3
599,047 - PFR28_00560 0.60 +1.2
599,047 - PFR28_00560 0.60 +1.6
599,047 - PFR28_00560 0.60 +1.7
599,047 - PFR28_00560 0.60 +1.5
599,047 - PFR28_00560 0.60 +1.9
599,114 - PFR28_00560 0.66 +1.2
599,114 - PFR28_00560 0.66 +0.8
599,373 + +2.1
599,383 + +1.5
599,383 + +0.8
599,384 - +1.2
599,384 - +2.1
599,385 + +1.3
599,385 + +2.1
599,385 + +0.9
599,385 + -0.5
599,386 - +2.0
599,386 - +1.6
599,386 - +1.2
599,386 - +0.8
599,450 + +2.5
599,482 + +1.1
599,483 - +0.1
599,540 + +2.4
599,541 - -1.2
599,544 + +2.7
599,544 + +2.3
599,626 + +1.8
599,626 + +1.1
599,626 + +0.4
599,627 - -1.3
599,627 - -2.8
599,627 - -1.6
599,664 + -0.7
599,664 + +0.0
599,664 + -1.0
599,664 + -2.2
599,664 + -1.4
599,735 + -0.6
599,888 + PFR28_00561 0.12 -1.1
599,889 - PFR28_00561 0.12 -1.4
599,889 - PFR28_00561 0.12 -1.7
599,889 - PFR28_00561 0.12 -1.7
599,889 - PFR28_00561 0.12 -2.0
599,889 - PFR28_00561 0.12 -1.6
599,990 - PFR28_00561 0.18 -1.2
600,258 - PFR28_00561 0.32 -1.2
600,311 + PFR28_00561 0.35 -2.0
600,338 + PFR28_00561 0.37 -1.7

Or see this region's nucleotide sequence