Strain Fitness in Pseudomonas sp. RS175 around PFR28_00546

Experiment: Xanthosine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00545 and PFR28_00546 are separated by 162 nucleotidesPFR28_00546 and PFR28_00547 are separated by 7 nucleotidesPFR28_00547 and PFR28_00548 are separated by 234 nucleotidesPFR28_00548 and PFR28_00549 are separated by 64 nucleotides PFR28_00545: PFR28_00545 - p-hydroxybenzoate hydroxylase, at 581,326 to 582,516 _00545 PFR28_00546: PFR28_00546 - HTH-type transcriptional activator RhaS, at 582,679 to 583,572 _00546 PFR28_00547: PFR28_00547 - hypothetical protein, at 583,580 to 583,756 _00547 PFR28_00548: PFR28_00548 - hypothetical protein, at 583,991 to 584,350 _00548 PFR28_00549: PFR28_00549 - Carbamate kinase 1, at 584,415 to 585,344 _00549 Position (kb) 582 583 584Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 581.843 kb on + strand, within PFR28_00545at 581.843 kb on + strand, within PFR28_00545at 581.844 kb on - strand, within PFR28_00545at 581.844 kb on - strand, within PFR28_00545at 581.907 kb on - strand, within PFR28_00545at 581.966 kb on + strand, within PFR28_00545at 581.966 kb on + strand, within PFR28_00545at 581.967 kb on - strand, within PFR28_00545at 581.967 kb on - strand, within PFR28_00545at 582.047 kb on + strand, within PFR28_00545at 582.047 kb on + strand, within PFR28_00545at 582.048 kb on - strand, within PFR28_00545at 582.048 kb on - strand, within PFR28_00545at 582.048 kb on - strand, within PFR28_00545at 582.144 kb on - strand, within PFR28_00545at 582.144 kb on - strand, within PFR28_00545at 582.209 kb on + strand, within PFR28_00545at 582.209 kb on + strand, within PFR28_00545at 582.209 kb on + strand, within PFR28_00545at 582.210 kb on - strand, within PFR28_00545at 582.395 kb on + strand, within PFR28_00545at 582.395 kb on + strand, within PFR28_00545at 582.395 kb on + strand, within PFR28_00545at 582.395 kb on + strand, within PFR28_00545at 582.395 kb on + strand, within PFR28_00545at 582.395 kb on + strand, within PFR28_00545at 582.396 kb on - strand, within PFR28_00545at 582.396 kb on - strand, within PFR28_00545at 582.396 kb on - strand, within PFR28_00545at 582.396 kb on - strand, within PFR28_00545at 582.396 kb on - strand, within PFR28_00545at 582.396 kb on - strand, within PFR28_00545at 582.396 kb on - strand, within PFR28_00545at 582.396 kb on - strand, within PFR28_00545at 582.523 kb on + strandat 582.566 kb on + strandat 582.567 kb on - strandat 582.567 kb on - strandat 582.567 kb on - strandat 582.567 kb on - strandat 582.567 kb on - strandat 582.567 kb on - strandat 582.567 kb on - strandat 582.721 kb on + strandat 582.850 kb on + strand, within PFR28_00546at 582.850 kb on + strand, within PFR28_00546at 582.850 kb on + strand, within PFR28_00546at 582.850 kb on + strand, within PFR28_00546at 582.850 kb on + strand, within PFR28_00546at 582.851 kb on - strand, within PFR28_00546at 582.851 kb on - strand, within PFR28_00546at 582.970 kb on + strand, within PFR28_00546at 582.970 kb on + strand, within PFR28_00546at 582.970 kb on + strand, within PFR28_00546at 582.970 kb on + strand, within PFR28_00546at 582.970 kb on + strand, within PFR28_00546at 582.970 kb on + strand, within PFR28_00546at 582.970 kb on + strand, within PFR28_00546at 582.971 kb on - strand, within PFR28_00546at 582.971 kb on - strand, within PFR28_00546at 582.971 kb on - strand, within PFR28_00546at 582.971 kb on - strand, within PFR28_00546at 582.971 kb on - strand, within PFR28_00546at 583.035 kb on + strand, within PFR28_00546at 583.036 kb on - strand, within PFR28_00546at 583.036 kb on - strand, within PFR28_00546at 583.081 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.117 kb on + strand, within PFR28_00546at 583.118 kb on - strand, within PFR28_00546at 583.118 kb on - strand, within PFR28_00546at 583.118 kb on - strand, within PFR28_00546at 583.118 kb on - strand, within PFR28_00546at 583.118 kb on - strand, within PFR28_00546at 583.118 kb on - strand, within PFR28_00546at 583.118 kb on - strand, within PFR28_00546at 583.118 kb on - strand, within PFR28_00546at 583.243 kb on + strand, within PFR28_00546at 583.244 kb on - strand, within PFR28_00546at 583.279 kb on + strand, within PFR28_00546at 583.279 kb on + strand, within PFR28_00546at 583.280 kb on - strand, within PFR28_00546at 583.429 kb on + strand, within PFR28_00546at 583.429 kb on + strand, within PFR28_00546at 583.429 kb on + strand, within PFR28_00546at 583.430 kb on - strand, within PFR28_00546at 583.430 kb on - strand, within PFR28_00546at 583.447 kb on + strand, within PFR28_00546at 583.447 kb on + strand, within PFR28_00546at 583.448 kb on - strand, within PFR28_00546at 583.448 kb on - strand, within PFR28_00546at 583.448 kb on - strand, within PFR28_00546at 583.448 kb on - strand, within PFR28_00546at 583.692 kb on + strand, within PFR28_00547at 583.692 kb on + strand, within PFR28_00547at 583.692 kb on + strand, within PFR28_00547at 583.802 kb on + strandat 583.802 kb on + strandat 583.802 kb on + strandat 583.802 kb on + strandat 583.802 kb on + strandat 583.802 kb on + strandat 583.802 kb on + strandat 583.802 kb on + strandat 583.802 kb on + strandat 583.803 kb on - strandat 583.803 kb on - strandat 583.803 kb on - strandat 583.803 kb on - strandat 583.803 kb on - strandat 583.803 kb on - strandat 583.803 kb on - strandat 583.803 kb on - strandat 583.845 kb on + strandat 584.070 kb on + strand, within PFR28_00548at 584.070 kb on + strand, within PFR28_00548at 584.070 kb on + strand, within PFR28_00548at 584.071 kb on - strand, within PFR28_00548at 584.071 kb on - strand, within PFR28_00548at 584.073 kb on + strand, within PFR28_00548at 584.073 kb on + strand, within PFR28_00548at 584.073 kb on + strand, within PFR28_00548at 584.073 kb on + strand, within PFR28_00548at 584.073 kb on + strand, within PFR28_00548at 584.074 kb on - strand, within PFR28_00548at 584.074 kb on - strand, within PFR28_00548at 584.074 kb on - strand, within PFR28_00548at 584.074 kb on - strand, within PFR28_00548at 584.074 kb on - strand, within PFR28_00548at 584.074 kb on - strand, within PFR28_00548at 584.074 kb on - strand, within PFR28_00548at 584.074 kb on - strand, within PFR28_00548at 584.074 kb on - strand, within PFR28_00548at 584.115 kb on + strand, within PFR28_00548at 584.115 kb on + strand, within PFR28_00548at 584.116 kb on - strand, within PFR28_00548at 584.116 kb on - strand, within PFR28_00548at 584.283 kb on + strand, within PFR28_00548at 584.283 kb on + strand, within PFR28_00548at 584.283 kb on + strand, within PFR28_00548at 584.284 kb on - strand, within PFR28_00548at 584.284 kb on - strand, within PFR28_00548at 584.284 kb on - strand, within PFR28_00548at 584.284 kb on - strand, within PFR28_00548at 584.320 kb on + strandat 584.321 kb on - strandat 584.321 kb on - strandat 584.351 kb on - strandat 584.351 kb on - strandat 584.380 kb on - strandat 584.422 kb on + strandat 584.422 kb on + strandat 584.422 kb on + strandat 584.423 kb on - strandat 584.423 kb on - strandat 584.427 kb on - strandat 584.427 kb on - strandat 584.427 kb on - strandat 584.427 kb on - strandat 584.427 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine (C) 10 mM
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581,843 + PFR28_00545 0.43 +1.0
581,843 + PFR28_00545 0.43 -0.5
581,844 - PFR28_00545 0.43 -1.1
581,844 - PFR28_00545 0.43 -1.0
581,907 - PFR28_00545 0.49 -1.2
581,966 + PFR28_00545 0.54 +0.0
581,966 + PFR28_00545 0.54 +0.3
581,967 - PFR28_00545 0.54 +0.5
581,967 - PFR28_00545 0.54 -1.4
582,047 + PFR28_00545 0.61 -0.4
582,047 + PFR28_00545 0.61 +0.4
582,048 - PFR28_00545 0.61 +0.9
582,048 - PFR28_00545 0.61 +2.0
582,048 - PFR28_00545 0.61 -0.7
582,144 - PFR28_00545 0.69 -0.5
582,144 - PFR28_00545 0.69 -1.8
582,209 + PFR28_00545 0.74 +0.2
582,209 + PFR28_00545 0.74 -0.2
582,209 + PFR28_00545 0.74 +0.2
582,210 - PFR28_00545 0.74 -0.1
582,395 + PFR28_00545 0.90 -1.1
582,395 + PFR28_00545 0.90 +0.1
582,395 + PFR28_00545 0.90 -0.0
582,395 + PFR28_00545 0.90 -0.2
582,395 + PFR28_00545 0.90 -1.4
582,395 + PFR28_00545 0.90 +1.0
582,396 - PFR28_00545 0.90 -0.9
582,396 - PFR28_00545 0.90 -0.5
582,396 - PFR28_00545 0.90 +0.0
582,396 - PFR28_00545 0.90 -1.5
582,396 - PFR28_00545 0.90 +0.1
582,396 - PFR28_00545 0.90 +0.6
582,396 - PFR28_00545 0.90 -0.3
582,396 - PFR28_00545 0.90 -1.1
582,523 + +0.2
582,566 + -0.0
582,567 - +1.3
582,567 - +1.0
582,567 - +0.3
582,567 - -0.0
582,567 - +0.2
582,567 - -2.2
582,567 - -0.2
582,721 + +0.1
582,850 + PFR28_00546 0.19 +1.8
582,850 + PFR28_00546 0.19 +0.9
582,850 + PFR28_00546 0.19 +0.8
582,850 + PFR28_00546 0.19 +2.3
582,850 + PFR28_00546 0.19 +0.8
582,851 - PFR28_00546 0.19 +1.0
582,851 - PFR28_00546 0.19 +0.2
582,970 + PFR28_00546 0.33 +1.0
582,970 + PFR28_00546 0.33 +1.0
582,970 + PFR28_00546 0.33 +0.8
582,970 + PFR28_00546 0.33 +0.6
582,970 + PFR28_00546 0.33 +0.8
582,970 + PFR28_00546 0.33 +0.7
582,970 + PFR28_00546 0.33 +1.2
582,971 - PFR28_00546 0.33 +1.3
582,971 - PFR28_00546 0.33 +1.8
582,971 - PFR28_00546 0.33 +0.7
582,971 - PFR28_00546 0.33 +0.5
582,971 - PFR28_00546 0.33 +0.9
583,035 + PFR28_00546 0.40 +1.1
583,036 - PFR28_00546 0.40 +0.3
583,036 - PFR28_00546 0.40 +0.3
583,081 + PFR28_00546 0.45 +0.4
583,117 + PFR28_00546 0.49 +1.2
583,117 + PFR28_00546 0.49 +0.2
583,117 + PFR28_00546 0.49 +1.4
583,117 + PFR28_00546 0.49 +2.9
583,117 + PFR28_00546 0.49 +1.4
583,117 + PFR28_00546 0.49 +0.5
583,117 + PFR28_00546 0.49 +2.4
583,117 + PFR28_00546 0.49 +0.6
583,117 + PFR28_00546 0.49 -0.3
583,117 + PFR28_00546 0.49 +0.9
583,118 - PFR28_00546 0.49 +0.3
583,118 - PFR28_00546 0.49 +0.5
583,118 - PFR28_00546 0.49 +1.8
583,118 - PFR28_00546 0.49 +0.9
583,118 - PFR28_00546 0.49 +0.5
583,118 - PFR28_00546 0.49 +2.1
583,118 - PFR28_00546 0.49 -0.3
583,118 - PFR28_00546 0.49 +0.8
583,243 + PFR28_00546 0.63 +0.8
583,244 - PFR28_00546 0.63 -0.1
583,279 + PFR28_00546 0.67 +1.4
583,279 + PFR28_00546 0.67 +0.7
583,280 - PFR28_00546 0.67 +1.1
583,429 + PFR28_00546 0.84 -0.5
583,429 + PFR28_00546 0.84 +0.2
583,429 + PFR28_00546 0.84 +0.5
583,430 - PFR28_00546 0.84 +1.2
583,430 - PFR28_00546 0.84 +0.8
583,447 + PFR28_00546 0.86 +0.4
583,447 + PFR28_00546 0.86 +0.7
583,448 - PFR28_00546 0.86 +1.3
583,448 - PFR28_00546 0.86 +0.5
583,448 - PFR28_00546 0.86 -0.4
583,448 - PFR28_00546 0.86 +1.4
583,692 + PFR28_00547 0.63 +0.3
583,692 + PFR28_00547 0.63 +0.6
583,692 + PFR28_00547 0.63 +0.0
583,802 + -1.5
583,802 + -0.7
583,802 + +1.0
583,802 + -0.3
583,802 + +1.4
583,802 + -0.6
583,802 + -0.8
583,802 + +0.3
583,802 + -0.2
583,803 - +0.9
583,803 - -0.2
583,803 - -0.8
583,803 - +0.3
583,803 - -0.2
583,803 - +0.5
583,803 - +1.2
583,803 - -0.0
583,845 + -0.4
584,070 + PFR28_00548 0.22 -0.3
584,070 + PFR28_00548 0.22 -0.3
584,070 + PFR28_00548 0.22 -0.5
584,071 - PFR28_00548 0.22 +0.4
584,071 - PFR28_00548 0.22 +1.1
584,073 + PFR28_00548 0.23 -2.0
584,073 + PFR28_00548 0.23 -0.1
584,073 + PFR28_00548 0.23 -1.6
584,073 + PFR28_00548 0.23 -0.0
584,073 + PFR28_00548 0.23 -0.0
584,074 - PFR28_00548 0.23 -0.6
584,074 - PFR28_00548 0.23 +1.3
584,074 - PFR28_00548 0.23 -2.9
584,074 - PFR28_00548 0.23 +0.2
584,074 - PFR28_00548 0.23 -0.1
584,074 - PFR28_00548 0.23 -1.4
584,074 - PFR28_00548 0.23 -2.2
584,074 - PFR28_00548 0.23 -0.0
584,074 - PFR28_00548 0.23 -0.0
584,115 + PFR28_00548 0.34 -0.1
584,115 + PFR28_00548 0.34 -0.4
584,116 - PFR28_00548 0.35 -0.4
584,116 - PFR28_00548 0.35 -1.5
584,283 + PFR28_00548 0.81 +0.5
584,283 + PFR28_00548 0.81 +0.5
584,283 + PFR28_00548 0.81 +0.0
584,284 - PFR28_00548 0.81 -0.1
584,284 - PFR28_00548 0.81 +0.1
584,284 - PFR28_00548 0.81 -0.1
584,284 - PFR28_00548 0.81 +0.7
584,320 + -1.0
584,321 - +1.1
584,321 - -0.2
584,351 - +0.2
584,351 - -0.2
584,380 - -0.2
584,422 + -0.2
584,422 + -0.3
584,422 + -2.6
584,423 - -1.2
584,423 - -0.3
584,427 - -2.8
584,427 - +0.4
584,427 - -0.4
584,427 - +1.3
584,427 - +0.6

Or see this region's nucleotide sequence