Experiment: Xanthosine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00450 and PFR28_00451 are separated by 87 nucleotides PFR28_00451 and PFR28_00452 overlap by 4 nucleotides PFR28_00452 and PFR28_00453 overlap by 1 nucleotides
PFR28_00450: PFR28_00450 - hypothetical protein, at 488,912 to 489,928
_00450
PFR28_00451: PFR28_00451 - hypothetical protein, at 490,016 to 490,582
_00451
PFR28_00452: PFR28_00452 - hypothetical protein, at 490,579 to 490,761
_00452
PFR28_00453: PFR28_00453 - hypothetical protein, at 490,761 to 492,257
_00453
Position (kb) 490
491 Strain fitness (log2 ratio) -2
-1
0
1 at 489.885 kb on - strand at 489.960 kb on - strand at 490.122 kb on - strand, within PFR28_00451 at 490.122 kb on - strand, within PFR28_00451 at 490.310 kb on + strand, within PFR28_00451 at 490.325 kb on + strand, within PFR28_00451 at 490.573 kb on - strand at 490.719 kb on + strand, within PFR28_00452 at 490.720 kb on - strand, within PFR28_00452 at 490.782 kb on - strand at 490.812 kb on + strand at 490.986 kb on + strand, within PFR28_00453 at 491.118 kb on + strand, within PFR28_00453 at 491.118 kb on + strand, within PFR28_00453 at 491.118 kb on + strand, within PFR28_00453 at 491.119 kb on - strand, within PFR28_00453 at 491.119 kb on - strand, within PFR28_00453 at 491.119 kb on - strand, within PFR28_00453 at 491.119 kb on - strand, within PFR28_00453 at 491.387 kb on + strand, within PFR28_00453 at 491.547 kb on + strand, within PFR28_00453 at 491.547 kb on + strand, within PFR28_00453 at 491.547 kb on + strand, within PFR28_00453 at 491.548 kb on - strand, within PFR28_00453 at 491.548 kb on - strand, within PFR28_00453 at 491.641 kb on + strand, within PFR28_00453 at 491.641 kb on + strand, within PFR28_00453
Per-strain Table
Position Strand Gene LocusTag Fraction Xanthosine (C) 10 mM remove 489,885 - -0.7 489,960 - +0.2 490,122 - PFR28_00451 0.19 +1.3 490,122 - PFR28_00451 0.19 +0.3 490,310 + PFR28_00451 0.52 +0.5 490,325 + PFR28_00451 0.54 +0.2 490,573 - -0.2 490,719 + PFR28_00452 0.77 +0.7 490,720 - PFR28_00452 0.77 +1.3 490,782 - -0.6 490,812 + -0.1 490,986 + PFR28_00453 0.15 -0.5 491,118 + PFR28_00453 0.24 +0.6 491,118 + PFR28_00453 0.24 -0.2 491,118 + PFR28_00453 0.24 +0.4 491,119 - PFR28_00453 0.24 -0.1 491,119 - PFR28_00453 0.24 +0.0 491,119 - PFR28_00453 0.24 -0.4 491,119 - PFR28_00453 0.24 -1.5 491,387 + PFR28_00453 0.42 +0.4 491,547 + PFR28_00453 0.53 -0.7 491,547 + PFR28_00453 0.53 +0.5 491,547 + PFR28_00453 0.53 -1.8 491,548 - PFR28_00453 0.53 +0.9 491,548 - PFR28_00453 0.53 +0.4 491,641 + PFR28_00453 0.59 -0.2 491,641 + PFR28_00453 0.59 -0.6
Or see this region's nucleotide sequence