Strain Fitness in Pseudomonas sp. RS175 around PFR28_00276

Experiment: Xanthosine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00273 and PFR28_00274 are separated by 149 nucleotidesPFR28_00274 and PFR28_00275 are separated by 287 nucleotidesPFR28_00275 and PFR28_00276 are separated by 108 nucleotidesPFR28_00276 and PFR28_00277 overlap by 4 nucleotides PFR28_00273: PFR28_00273 - putative BsuMI modification methylase subunit YdiO, at 303,563 to 304,621 _00273 PFR28_00274: PFR28_00274 - hypothetical protein, at 304,771 to 305,100 _00274 PFR28_00275: PFR28_00275 - tRNA-Leu, at 305,388 to 305,472 _00275 PFR28_00276: PFR28_00276 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 305,581 to 306,630 _00276 PFR28_00277: PFR28_00277 - Queuine tRNA-ribosyltransferase, at 306,627 to 307,760 _00277 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1 2 3at 304.648 kb on - strandat 304.658 kb on - strandat 304.658 kb on - strandat 304.658 kb on - strandat 304.734 kb on + strandat 304.734 kb on + strandat 304.763 kb on + strandat 304.764 kb on - strandat 304.764 kb on - strandat 304.764 kb on - strandat 304.764 kb on - strandat 304.764 kb on - strandat 304.779 kb on + strandat 304.790 kb on + strandat 304.790 kb on + strandat 304.791 kb on - strandat 304.798 kb on - strandat 304.830 kb on + strand, within PFR28_00274at 304.888 kb on - strand, within PFR28_00274at 305.051 kb on + strand, within PFR28_00274at 305.052 kb on - strand, within PFR28_00274at 305.052 kb on - strand, within PFR28_00274at 305.052 kb on - strand, within PFR28_00274at 305.069 kb on + strandat 305.070 kb on - strandat 305.070 kb on - strandat 305.070 kb on - strandat 305.240 kb on + strandat 305.240 kb on + strandat 305.240 kb on + strandat 305.241 kb on - strandat 305.241 kb on - strandat 305.243 kb on + strandat 305.243 kb on + strandat 305.243 kb on + strandat 305.549 kb on - strandat 305.566 kb on + strandat 305.598 kb on + strandat 306.022 kb on + strand, within PFR28_00276at 306.022 kb on + strand, within PFR28_00276at 306.022 kb on + strand, within PFR28_00276at 306.022 kb on + strand, within PFR28_00276at 306.022 kb on + strand, within PFR28_00276at 306.022 kb on + strand, within PFR28_00276at 306.023 kb on - strand, within PFR28_00276at 306.023 kb on - strand, within PFR28_00276at 306.023 kb on - strand, within PFR28_00276at 306.023 kb on - strand, within PFR28_00276at 306.024 kb on + strand, within PFR28_00276at 306.024 kb on + strand, within PFR28_00276at 306.024 kb on + strand, within PFR28_00276at 306.024 kb on + strand, within PFR28_00276at 306.024 kb on + strand, within PFR28_00276at 306.024 kb on + strand, within PFR28_00276at 306.024 kb on + strand, within PFR28_00276at 306.024 kb on + strand, within PFR28_00276at 306.025 kb on - strand, within PFR28_00276at 306.025 kb on - strand, within PFR28_00276at 306.025 kb on - strand, within PFR28_00276at 306.025 kb on - strand, within PFR28_00276at 306.026 kb on + strand, within PFR28_00276at 306.026 kb on + strand, within PFR28_00276at 306.026 kb on + strand, within PFR28_00276at 306.026 kb on + strand, within PFR28_00276at 306.027 kb on - strand, within PFR28_00276at 306.027 kb on - strand, within PFR28_00276at 306.027 kb on - strand, within PFR28_00276at 306.073 kb on + strand, within PFR28_00276at 306.073 kb on + strand, within PFR28_00276at 306.529 kb on + strandat 306.529 kb on + strandat 306.529 kb on + strandat 306.530 kb on - strandat 306.530 kb on - strandat 306.626 kb on + strandat 306.626 kb on + strandat 306.626 kb on + strandat 306.626 kb on + strandat 306.626 kb on + strandat 306.627 kb on - strandat 306.627 kb on - strandat 306.748 kb on - strand, within PFR28_00277at 306.748 kb on - strand, within PFR28_00277at 307.045 kb on + strand, within PFR28_00277at 307.046 kb on - strand, within PFR28_00277at 307.327 kb on - strand, within PFR28_00277at 307.551 kb on + strand, within PFR28_00277at 307.551 kb on + strand, within PFR28_00277at 307.619 kb on + strand, within PFR28_00277at 307.619 kb on + strand, within PFR28_00277

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine (C) 10 mM
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304,648 - +0.3
304,658 - -0.2
304,658 - -1.3
304,658 - -0.9
304,734 + -1.0
304,734 + +0.6
304,763 + -0.3
304,764 - +0.5
304,764 - +1.0
304,764 - +0.1
304,764 - +0.1
304,764 - +1.5
304,779 + -0.2
304,790 + +1.9
304,790 + -1.7
304,791 - -0.5
304,798 - +2.0
304,830 + PFR28_00274 0.18 -0.3
304,888 - PFR28_00274 0.35 +1.8
305,051 + PFR28_00274 0.85 +1.0
305,052 - PFR28_00274 0.85 +1.1
305,052 - PFR28_00274 0.85 -0.2
305,052 - PFR28_00274 0.85 +1.2
305,069 + -0.0
305,070 - -0.3
305,070 - +0.9
305,070 - +0.7
305,240 + +0.0
305,240 + +0.1
305,240 + +1.1
305,241 - +0.3
305,241 - -0.7
305,243 + -1.1
305,243 + +0.9
305,243 + -0.9
305,549 - +0.3
305,566 + +0.6
305,598 + +0.4
306,022 + PFR28_00276 0.42 -0.4
306,022 + PFR28_00276 0.42 +0.7
306,022 + PFR28_00276 0.42 +0.1
306,022 + PFR28_00276 0.42 -0.5
306,022 + PFR28_00276 0.42 -0.3
306,022 + PFR28_00276 0.42 +1.3
306,023 - PFR28_00276 0.42 -0.0
306,023 - PFR28_00276 0.42 +1.2
306,023 - PFR28_00276 0.42 +0.8
306,023 - PFR28_00276 0.42 +0.5
306,024 + PFR28_00276 0.42 -0.8
306,024 + PFR28_00276 0.42 +1.8
306,024 + PFR28_00276 0.42 +0.4
306,024 + PFR28_00276 0.42 +0.6
306,024 + PFR28_00276 0.42 +1.3
306,024 + PFR28_00276 0.42 +0.4
306,024 + PFR28_00276 0.42 +1.3
306,024 + PFR28_00276 0.42 +0.6
306,025 - PFR28_00276 0.42 +0.2
306,025 - PFR28_00276 0.42 +1.0
306,025 - PFR28_00276 0.42 -1.2
306,025 - PFR28_00276 0.42 -0.8
306,026 + PFR28_00276 0.42 -0.5
306,026 + PFR28_00276 0.42 +0.5
306,026 + PFR28_00276 0.42 -1.1
306,026 + PFR28_00276 0.42 +0.6
306,027 - PFR28_00276 0.42 -0.5
306,027 - PFR28_00276 0.42 +0.4
306,027 - PFR28_00276 0.42 +1.6
306,073 + PFR28_00276 0.47 +0.7
306,073 + PFR28_00276 0.47 +1.3
306,529 + +0.7
306,529 + +1.3
306,529 + +0.1
306,530 - +0.3
306,530 - +0.5
306,626 + +3.1
306,626 + -2.4
306,626 + -0.9
306,626 + +1.6
306,626 + -1.1
306,627 - -2.5
306,627 - +0.4
306,748 - PFR28_00277 0.11 -0.0
306,748 - PFR28_00277 0.11 +0.1
307,045 + PFR28_00277 0.37 -0.2
307,046 - PFR28_00277 0.37 +0.4
307,327 - PFR28_00277 0.62 -0.4
307,551 + PFR28_00277 0.81 +1.4
307,551 + PFR28_00277 0.81 -1.0
307,619 + PFR28_00277 0.87 +1.6
307,619 + PFR28_00277 0.87 +0.8

Or see this region's nucleotide sequence