Strain Fitness in Pseudomonas simiae WCS417 around PS417_28095

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28090 and PS417_28095 are separated by 454 nucleotidesPS417_28095 and PS417_28100 are separated by 58 nucleotides PS417_28090: PS417_28090 - MFS transporter, at 6,062,683 to 6,063,972 _28090 PS417_28095: PS417_28095 - long-chain acyl-CoA thioester hydrolase, at 6,064,427 to 6,064,831 _28095 PS417_28100: PS417_28100 - glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data), at 6,064,890 to 6,065,789 _28100 Position (kb) 6064 6065Strain fitness (log2 ratio) -2 -1 0 1at 6063.914 kb on + strandat 6063.972 kb on + strandat 6063.972 kb on + strandat 6063.972 kb on + strandat 6063.972 kb on + strandat 6063.972 kb on + strandat 6063.973 kb on - strandat 6063.973 kb on - strandat 6063.973 kb on - strandat 6063.973 kb on - strandat 6063.973 kb on - strandat 6063.987 kb on + strandat 6063.987 kb on + strandat 6063.987 kb on + strandat 6063.988 kb on - strandat 6063.989 kb on + strandat 6063.990 kb on - strandat 6063.990 kb on - strandat 6063.990 kb on - strandat 6063.990 kb on - strandat 6063.992 kb on + strandat 6064.035 kb on - strandat 6064.035 kb on - strandat 6064.078 kb on + strandat 6064.078 kb on + strandat 6064.079 kb on - strandat 6064.312 kb on - strandat 6064.344 kb on + strandat 6064.344 kb on + strandat 6064.344 kb on + strandat 6064.344 kb on + strandat 6064.344 kb on + strandat 6064.344 kb on + strandat 6064.344 kb on + strandat 6064.345 kb on - strandat 6064.345 kb on - strandat 6064.345 kb on - strandat 6064.393 kb on - strandat 6064.773 kb on + strand, within PS417_28095at 6065.001 kb on + strand, within PS417_28100at 6065.110 kb on + strand, within PS417_28100at 6065.397 kb on + strand, within PS417_28100at 6065.398 kb on - strand, within PS417_28100at 6065.454 kb on + strand, within PS417_28100at 6065.454 kb on + strand, within PS417_28100at 6065.454 kb on + strand, within PS417_28100at 6065.455 kb on - strand, within PS417_28100at 6065.532 kb on + strand, within PS417_28100at 6065.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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6,063,914 + +0.6
6,063,972 + -0.1
6,063,972 + -1.1
6,063,972 + +0.6
6,063,972 + -1.0
6,063,972 + -0.1
6,063,973 - -0.8
6,063,973 - -0.1
6,063,973 - -0.5
6,063,973 - +1.2
6,063,973 - +0.1
6,063,987 + +0.1
6,063,987 + -0.3
6,063,987 + -0.7
6,063,988 - +0.2
6,063,989 + -0.1
6,063,990 - +0.1
6,063,990 - +0.2
6,063,990 - -1.3
6,063,990 - +0.8
6,063,992 + -0.2
6,064,035 - +1.6
6,064,035 - -0.3
6,064,078 + +0.1
6,064,078 + +0.2
6,064,079 - -0.7
6,064,312 - +0.9
6,064,344 + +0.7
6,064,344 + +0.2
6,064,344 + -1.8
6,064,344 + +0.1
6,064,344 + -0.2
6,064,344 + +0.1
6,064,344 + -0.9
6,064,345 - +1.0
6,064,345 - +0.3
6,064,345 - +1.4
6,064,393 - +0.8
6,064,773 + PS417_28095 0.85 +0.7
6,065,001 + PS417_28100 0.12 -0.4
6,065,110 + PS417_28100 0.24 +1.2
6,065,397 + PS417_28100 0.56 +0.5
6,065,398 - PS417_28100 0.56 +0.3
6,065,454 + PS417_28100 0.63 -0.1
6,065,454 + PS417_28100 0.63 -1.6
6,065,454 + PS417_28100 0.63 -0.4
6,065,455 - PS417_28100 0.63 -0.2
6,065,532 + PS417_28100 0.71 -0.8
6,065,780 - +0.0

Or see this region's nucleotide sequence