Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4581

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4579 and Echvi_4580 are separated by 16 nucleotidesEchvi_4580 and Echvi_4581 are separated by 154 nucleotidesEchvi_4581 and Echvi_4582 are separated by 664 nucleotides Echvi_4579: Echvi_4579 - hypothetical protein, at 5,485,880 to 5,486,062 _4579 Echvi_4580: Echvi_4580 - Small-conductance mechanosensitive channel, at 5,486,079 to 5,486,906 _4580 Echvi_4581: Echvi_4581 - hypothetical protein, at 5,487,061 to 5,487,384 _4581 Echvi_4582: Echvi_4582 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 5,488,049 to 5,488,462 _4582 Position (kb) 5487 5488Strain fitness (log2 ratio) -2 -1 0 1 2at 5486.061 kb on - strandat 5486.067 kb on - strandat 5486.078 kb on + strandat 5486.100 kb on - strandat 5486.122 kb on + strandat 5486.122 kb on + strandat 5486.122 kb on + strandat 5486.123 kb on - strandat 5486.123 kb on - strandat 5486.127 kb on - strandat 5486.175 kb on - strand, within Echvi_4580at 5486.254 kb on + strand, within Echvi_4580at 5486.295 kb on - strand, within Echvi_4580at 5486.325 kb on - strand, within Echvi_4580at 5486.328 kb on - strand, within Echvi_4580at 5486.367 kb on - strand, within Echvi_4580at 5486.402 kb on - strand, within Echvi_4580at 5486.402 kb on - strand, within Echvi_4580at 5486.432 kb on + strand, within Echvi_4580at 5486.432 kb on + strand, within Echvi_4580at 5486.432 kb on + strand, within Echvi_4580at 5486.478 kb on + strand, within Echvi_4580at 5486.478 kb on + strand, within Echvi_4580at 5486.478 kb on + strand, within Echvi_4580at 5486.478 kb on + strand, within Echvi_4580at 5486.479 kb on - strand, within Echvi_4580at 5486.558 kb on + strand, within Echvi_4580at 5486.559 kb on - strand, within Echvi_4580at 5486.568 kb on + strand, within Echvi_4580at 5486.569 kb on - strand, within Echvi_4580at 5486.569 kb on - strand, within Echvi_4580at 5486.571 kb on - strand, within Echvi_4580at 5486.703 kb on - strand, within Echvi_4580at 5486.813 kb on + strand, within Echvi_4580at 5486.923 kb on + strandat 5486.955 kb on - strandat 5486.996 kb on + strandat 5486.996 kb on + strandat 5486.996 kb on + strandat 5486.996 kb on + strandat 5486.997 kb on - strandat 5487.007 kb on + strandat 5487.007 kb on + strandat 5487.016 kb on + strandat 5487.074 kb on + strandat 5487.074 kb on + strandat 5487.074 kb on + strandat 5487.074 kb on + strandat 5487.075 kb on - strandat 5487.075 kb on - strandat 5487.078 kb on + strandat 5487.078 kb on + strandat 5487.078 kb on + strandat 5487.079 kb on - strandat 5487.079 kb on - strandat 5487.139 kb on + strand, within Echvi_4581at 5487.170 kb on + strand, within Echvi_4581at 5487.170 kb on + strand, within Echvi_4581at 5487.171 kb on - strand, within Echvi_4581at 5487.175 kb on - strand, within Echvi_4581at 5487.197 kb on + strand, within Echvi_4581at 5487.197 kb on + strand, within Echvi_4581at 5487.198 kb on - strand, within Echvi_4581at 5487.267 kb on + strand, within Echvi_4581at 5487.310 kb on + strand, within Echvi_4581at 5487.311 kb on - strand, within Echvi_4581at 5487.351 kb on + strand, within Echvi_4581at 5487.351 kb on + strand, within Echvi_4581at 5487.352 kb on - strandat 5487.353 kb on + strandat 5487.353 kb on + strandat 5487.353 kb on + strandat 5487.353 kb on + strandat 5487.353 kb on + strandat 5487.353 kb on + strandat 5487.353 kb on + strandat 5487.353 kb on + strandat 5487.353 kb on + strandat 5487.353 kb on + strandat 5487.354 kb on - strandat 5487.354 kb on - strandat 5487.354 kb on - strandat 5487.354 kb on - strandat 5487.373 kb on + strandat 5487.384 kb on + strandat 5487.409 kb on - strandat 5487.434 kb on - strandat 5487.481 kb on + strandat 5487.565 kb on - strandat 5487.597 kb on + strandat 5487.610 kb on - strandat 5487.677 kb on - strandat 5487.731 kb on + strandat 5487.732 kb on - strandat 5487.772 kb on + strandat 5487.800 kb on - strandat 5487.804 kb on + strandat 5487.804 kb on + strandat 5487.823 kb on - strandat 5487.870 kb on + strandat 5487.870 kb on + strandat 5487.871 kb on - strandat 5487.885 kb on + strandat 5487.886 kb on - strandat 5487.903 kb on + strandat 5487.906 kb on + strandat 5487.906 kb on + strandat 5487.975 kb on + strandat 5487.975 kb on + strandat 5487.975 kb on + strandat 5488.019 kb on - strandat 5488.019 kb on - strandat 5488.019 kb on - strandat 5488.021 kb on - strandat 5488.251 kb on - strand, within Echvi_4582at 5488.308 kb on - strand, within Echvi_4582at 5488.308 kb on - strand, within Echvi_4582at 5488.330 kb on + strand, within Echvi_4582

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
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5,486,061 - -0.7
5,486,067 - -0.2
5,486,078 + -1.6
5,486,100 - -0.5
5,486,122 + -0.8
5,486,122 + -1.0
5,486,122 + -0.1
5,486,123 - -0.3
5,486,123 - +0.7
5,486,127 - -0.3
5,486,175 - Echvi_4580 0.12 +0.9
5,486,254 + Echvi_4580 0.21 -0.6
5,486,295 - Echvi_4580 0.26 -0.7
5,486,325 - Echvi_4580 0.30 -1.9
5,486,328 - Echvi_4580 0.30 -0.2
5,486,367 - Echvi_4580 0.35 +2.5
5,486,402 - Echvi_4580 0.39 -0.4
5,486,402 - Echvi_4580 0.39 -0.4
5,486,432 + Echvi_4580 0.43 +0.3
5,486,432 + Echvi_4580 0.43 -0.1
5,486,432 + Echvi_4580 0.43 +0.3
5,486,478 + Echvi_4580 0.48 -0.1
5,486,478 + Echvi_4580 0.48 +0.2
5,486,478 + Echvi_4580 0.48 -0.7
5,486,478 + Echvi_4580 0.48 +0.2
5,486,479 - Echvi_4580 0.48 +1.9
5,486,558 + Echvi_4580 0.58 -0.9
5,486,559 - Echvi_4580 0.58 +0.0
5,486,568 + Echvi_4580 0.59 +0.1
5,486,569 - Echvi_4580 0.59 -2.4
5,486,569 - Echvi_4580 0.59 -0.2
5,486,571 - Echvi_4580 0.59 -0.2
5,486,703 - Echvi_4580 0.75 +0.7
5,486,813 + Echvi_4580 0.89 +0.0
5,486,923 + -0.4
5,486,955 - +1.3
5,486,996 + +1.3
5,486,996 + -0.9
5,486,996 + +0.1
5,486,996 + +1.5
5,486,997 - +0.0
5,487,007 + +0.5
5,487,007 + +1.3
5,487,016 + -0.5
5,487,074 + -1.0
5,487,074 + +0.3
5,487,074 + -1.0
5,487,074 + -0.1
5,487,075 - -0.5
5,487,075 - -1.0
5,487,078 + -0.3
5,487,078 + -1.8
5,487,078 + +0.7
5,487,079 - +1.6
5,487,079 - -0.1
5,487,139 + Echvi_4581 0.24 +0.1
5,487,170 + Echvi_4581 0.34 +0.5
5,487,170 + Echvi_4581 0.34 +0.2
5,487,171 - Echvi_4581 0.34 +0.7
5,487,175 - Echvi_4581 0.35 -0.9
5,487,197 + Echvi_4581 0.42 +1.7
5,487,197 + Echvi_4581 0.42 +0.4
5,487,198 - Echvi_4581 0.42 -1.5
5,487,267 + Echvi_4581 0.64 +0.3
5,487,310 + Echvi_4581 0.77 +0.4
5,487,311 - Echvi_4581 0.77 +0.3
5,487,351 + Echvi_4581 0.90 +0.0
5,487,351 + Echvi_4581 0.90 +0.9
5,487,352 - -0.0
5,487,353 + -0.5
5,487,353 + +0.1
5,487,353 + +0.4
5,487,353 + +0.1
5,487,353 + +0.4
5,487,353 + -1.1
5,487,353 + -0.6
5,487,353 + -0.5
5,487,353 + -0.7
5,487,353 + +0.6
5,487,354 - -0.6
5,487,354 - +1.1
5,487,354 - +0.4
5,487,354 - +0.1
5,487,373 + -1.9
5,487,384 + +0.3
5,487,409 - -0.2
5,487,434 - -0.1
5,487,481 + -1.1
5,487,565 - +1.7
5,487,597 + +0.9
5,487,610 - +0.9
5,487,677 - +0.1
5,487,731 + -0.3
5,487,732 - +0.1
5,487,772 + -0.2
5,487,800 - -0.7
5,487,804 + -0.2
5,487,804 + +0.0
5,487,823 - +1.0
5,487,870 + +0.8
5,487,870 + +0.4
5,487,871 - +1.3
5,487,885 + -0.1
5,487,886 - +0.0
5,487,903 + -0.4
5,487,906 + +0.9
5,487,906 + -0.4
5,487,975 + -0.6
5,487,975 + +0.5
5,487,975 + -0.3
5,488,019 - +1.9
5,488,019 - -0.2
5,488,019 - -0.6
5,488,021 - -1.1
5,488,251 - Echvi_4582 0.49 +0.4
5,488,308 - Echvi_4582 0.63 +0.3
5,488,308 - Echvi_4582 0.63 -1.2
5,488,330 + Echvi_4582 0.68 -1.5

Or see this region's nucleotide sequence