Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4177

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4175 and Echvi_4176 are separated by 113 nucleotidesEchvi_4176 and Echvi_4177 overlap by 4 nucleotidesEchvi_4177 and Echvi_4178 are separated by 13 nucleotidesEchvi_4178 and Echvi_4179 are separated by 82 nucleotides Echvi_4175: Echvi_4175 - hypothetical protein, at 4,991,458 to 4,992,519 _4175 Echvi_4176: Echvi_4176 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit, at 4,992,633 to 4,993,325 _4176 Echvi_4177: Echvi_4177 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 4,993,322 to 4,994,305 _4177 Echvi_4178: Echvi_4178 - Aldo/keto reductases, related to diketogulonate reductase, at 4,994,319 to 4,995,170 _4178 Echvi_4179: Echvi_4179 - Predicted membrane protein, at 4,995,253 to 4,996,560 _4179 Position (kb) 4993 4994 4995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4992.377 kb on + strand, within Echvi_4175at 4992.377 kb on + strand, within Echvi_4175at 4992.378 kb on - strand, within Echvi_4175at 4992.378 kb on - strand, within Echvi_4175at 4992.378 kb on - strand, within Echvi_4175at 4992.401 kb on - strand, within Echvi_4175at 4992.418 kb on + strandat 4992.419 kb on - strandat 4992.439 kb on + strandat 4992.440 kb on - strandat 4992.478 kb on + strandat 4992.479 kb on - strandat 4992.480 kb on + strandat 4992.480 kb on + strandat 4992.484 kb on + strandat 4992.485 kb on - strandat 4992.486 kb on + strandat 4992.486 kb on + strandat 4992.486 kb on + strandat 4992.486 kb on + strandat 4992.486 kb on + strandat 4992.487 kb on - strandat 4992.487 kb on - strandat 4992.487 kb on - strandat 4992.487 kb on - strandat 4992.487 kb on - strandat 4992.487 kb on - strandat 4992.532 kb on + strandat 4992.570 kb on + strandat 4992.570 kb on + strandat 4992.572 kb on + strandat 4992.572 kb on + strandat 4992.576 kb on + strandat 4992.593 kb on + strandat 4992.594 kb on - strandat 4992.620 kb on - strandat 4992.688 kb on + strandat 4992.696 kb on + strandat 4992.696 kb on + strandat 4992.708 kb on + strand, within Echvi_4176at 4992.709 kb on - strand, within Echvi_4176at 4992.750 kb on + strand, within Echvi_4176at 4992.780 kb on + strand, within Echvi_4176at 4992.833 kb on - strand, within Echvi_4176at 4992.887 kb on + strand, within Echvi_4176at 4992.887 kb on + strand, within Echvi_4176at 4992.914 kb on - strand, within Echvi_4176at 4993.025 kb on + strand, within Echvi_4176at 4993.025 kb on + strand, within Echvi_4176at 4993.108 kb on + strand, within Echvi_4176at 4993.114 kb on + strand, within Echvi_4176at 4993.206 kb on + strand, within Echvi_4176at 4993.291 kb on - strandat 4993.296 kb on + strandat 4993.297 kb on - strandat 4993.305 kb on + strandat 4993.305 kb on + strandat 4993.306 kb on - strandat 4993.306 kb on - strandat 4993.309 kb on - strandat 4993.331 kb on + strandat 4993.357 kb on - strandat 4993.385 kb on + strandat 4993.407 kb on - strandat 4993.471 kb on + strand, within Echvi_4177at 4993.472 kb on - strand, within Echvi_4177at 4993.627 kb on + strand, within Echvi_4177at 4993.628 kb on - strand, within Echvi_4177at 4993.744 kb on + strand, within Echvi_4177at 4993.744 kb on + strand, within Echvi_4177at 4993.880 kb on - strand, within Echvi_4177at 4993.880 kb on - strand, within Echvi_4177at 4993.880 kb on - strand, within Echvi_4177at 4993.880 kb on - strand, within Echvi_4177at 4993.884 kb on - strand, within Echvi_4177at 4993.884 kb on - strand, within Echvi_4177at 4993.884 kb on - strand, within Echvi_4177at 4993.936 kb on + strand, within Echvi_4177at 4993.937 kb on - strand, within Echvi_4177at 4993.937 kb on - strand, within Echvi_4177at 4993.956 kb on - strand, within Echvi_4177at 4993.956 kb on - strand, within Echvi_4177at 4993.957 kb on + strand, within Echvi_4177at 4994.123 kb on - strand, within Echvi_4177at 4994.126 kb on - strand, within Echvi_4177at 4994.136 kb on + strand, within Echvi_4177at 4994.320 kb on + strandat 4994.321 kb on - strandat 4994.321 kb on - strandat 4994.321 kb on - strandat 4994.321 kb on - strandat 4994.321 kb on - strandat 4994.322 kb on + strandat 4994.323 kb on - strandat 4994.369 kb on + strandat 4994.369 kb on + strandat 4994.388 kb on - strandat 4994.388 kb on - strandat 4994.466 kb on + strand, within Echvi_4178at 4994.477 kb on + strand, within Echvi_4178at 4994.478 kb on - strand, within Echvi_4178at 4994.502 kb on + strand, within Echvi_4178at 4994.503 kb on - strand, within Echvi_4178at 4994.637 kb on + strand, within Echvi_4178at 4994.637 kb on + strand, within Echvi_4178at 4994.638 kb on - strand, within Echvi_4178at 4994.638 kb on - strand, within Echvi_4178at 4994.735 kb on + strand, within Echvi_4178at 4994.801 kb on - strand, within Echvi_4178at 4994.801 kb on - strand, within Echvi_4178at 4994.802 kb on + strand, within Echvi_4178at 4994.903 kb on + strand, within Echvi_4178at 4994.933 kb on + strand, within Echvi_4178at 4994.933 kb on + strand, within Echvi_4178at 4994.957 kb on + strand, within Echvi_4178at 4994.960 kb on + strand, within Echvi_4178at 4995.023 kb on + strand, within Echvi_4178at 4995.023 kb on + strand, within Echvi_4178at 4995.024 kb on - strand, within Echvi_4178at 4995.025 kb on + strand, within Echvi_4178at 4995.026 kb on - strand, within Echvi_4178at 4995.026 kb on - strand, within Echvi_4178at 4995.043 kb on - strand, within Echvi_4178at 4995.057 kb on + strand, within Echvi_4178at 4995.057 kb on + strand, within Echvi_4178at 4995.058 kb on - strand, within Echvi_4178at 4995.058 kb on - strand, within Echvi_4178at 4995.058 kb on - strand, within Echvi_4178at 4995.059 kb on + strand, within Echvi_4178at 4995.059 kb on + strand, within Echvi_4178at 4995.063 kb on + strand, within Echvi_4178at 4995.063 kb on + strand, within Echvi_4178at 4995.063 kb on + strand, within Echvi_4178at 4995.063 kb on + strand, within Echvi_4178at 4995.215 kb on + strandat 4995.241 kb on + strandat 4995.242 kb on - strandat 4995.242 kb on - strandat 4995.242 kb on - strandat 4995.271 kb on + strandat 4995.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
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4,992,377 + Echvi_4175 0.87 -0.7
4,992,377 + Echvi_4175 0.87 +0.5
4,992,378 - Echvi_4175 0.87 +0.0
4,992,378 - Echvi_4175 0.87 -0.3
4,992,378 - Echvi_4175 0.87 -0.2
4,992,401 - Echvi_4175 0.89 +0.1
4,992,418 + -0.1
4,992,419 - +1.0
4,992,439 + -0.0
4,992,440 - -0.5
4,992,478 + -2.0
4,992,479 - +1.0
4,992,480 + -0.7
4,992,480 + +0.4
4,992,484 + +0.1
4,992,485 - -0.3
4,992,486 + +0.7
4,992,486 + +0.5
4,992,486 + +0.3
4,992,486 + -0.4
4,992,486 + +0.8
4,992,487 - +0.9
4,992,487 - +0.0
4,992,487 - +0.4
4,992,487 - -1.1
4,992,487 - +1.5
4,992,487 - +0.4
4,992,532 + +0.8
4,992,570 + +0.7
4,992,570 + -0.9
4,992,572 + -1.7
4,992,572 + -0.5
4,992,576 + -1.6
4,992,593 + -1.3
4,992,594 - +0.8
4,992,620 - -0.3
4,992,688 + +0.6
4,992,696 + -0.7
4,992,696 + -1.0
4,992,708 + Echvi_4176 0.11 -0.7
4,992,709 - Echvi_4176 0.11 -0.2
4,992,750 + Echvi_4176 0.17 -0.4
4,992,780 + Echvi_4176 0.21 -0.1
4,992,833 - Echvi_4176 0.29 +0.7
4,992,887 + Echvi_4176 0.37 -1.0
4,992,887 + Echvi_4176 0.37 +0.5
4,992,914 - Echvi_4176 0.41 -2.1
4,993,025 + Echvi_4176 0.57 +1.1
4,993,025 + Echvi_4176 0.57 -1.3
4,993,108 + Echvi_4176 0.69 +1.2
4,993,114 + Echvi_4176 0.69 -0.9
4,993,206 + Echvi_4176 0.83 -0.8
4,993,291 - -0.5
4,993,296 + +0.8
4,993,297 - +0.4
4,993,305 + +1.0
4,993,305 + +0.2
4,993,306 - -2.2
4,993,306 - -0.4
4,993,309 - +1.5
4,993,331 + -0.2
4,993,357 - +1.0
4,993,385 + +1.4
4,993,407 - -0.8
4,993,471 + Echvi_4177 0.15 +0.2
4,993,472 - Echvi_4177 0.15 +0.7
4,993,627 + Echvi_4177 0.31 +0.2
4,993,628 - Echvi_4177 0.31 -1.2
4,993,744 + Echvi_4177 0.43 +1.2
4,993,744 + Echvi_4177 0.43 +1.4
4,993,880 - Echvi_4177 0.57 +0.0
4,993,880 - Echvi_4177 0.57 -0.3
4,993,880 - Echvi_4177 0.57 +0.4
4,993,880 - Echvi_4177 0.57 +0.9
4,993,884 - Echvi_4177 0.57 -1.2
4,993,884 - Echvi_4177 0.57 +0.2
4,993,884 - Echvi_4177 0.57 +0.2
4,993,936 + Echvi_4177 0.62 -0.2
4,993,937 - Echvi_4177 0.62 +0.8
4,993,937 - Echvi_4177 0.62 +0.8
4,993,956 - Echvi_4177 0.64 +2.0
4,993,956 - Echvi_4177 0.64 -2.2
4,993,957 + Echvi_4177 0.65 +0.7
4,994,123 - Echvi_4177 0.81 -1.3
4,994,126 - Echvi_4177 0.82 -0.8
4,994,136 + Echvi_4177 0.83 +0.7
4,994,320 + +0.4
4,994,321 - -0.2
4,994,321 - -1.0
4,994,321 - +0.7
4,994,321 - -0.6
4,994,321 - +1.1
4,994,322 + +0.7
4,994,323 - +0.0
4,994,369 + +0.7
4,994,369 + -0.8
4,994,388 - +0.2
4,994,388 - +0.2
4,994,466 + Echvi_4178 0.17 +0.2
4,994,477 + Echvi_4178 0.19 -1.0
4,994,478 - Echvi_4178 0.19 -0.1
4,994,502 + Echvi_4178 0.21 -1.4
4,994,503 - Echvi_4178 0.22 -0.8
4,994,637 + Echvi_4178 0.37 +0.0
4,994,637 + Echvi_4178 0.37 -2.8
4,994,638 - Echvi_4178 0.37 -0.5
4,994,638 - Echvi_4178 0.37 +0.7
4,994,735 + Echvi_4178 0.49 +1.1
4,994,801 - Echvi_4178 0.57 -0.1
4,994,801 - Echvi_4178 0.57 +0.4
4,994,802 + Echvi_4178 0.57 -0.8
4,994,903 + Echvi_4178 0.69 +0.6
4,994,933 + Echvi_4178 0.72 -0.1
4,994,933 + Echvi_4178 0.72 +0.3
4,994,957 + Echvi_4178 0.75 -0.5
4,994,960 + Echvi_4178 0.75 +0.5
4,995,023 + Echvi_4178 0.83 -0.6
4,995,023 + Echvi_4178 0.83 +1.8
4,995,024 - Echvi_4178 0.83 -1.7
4,995,025 + Echvi_4178 0.83 +0.4
4,995,026 - Echvi_4178 0.83 +0.8
4,995,026 - Echvi_4178 0.83 +0.0
4,995,043 - Echvi_4178 0.85 -0.5
4,995,057 + Echvi_4178 0.87 +0.1
4,995,057 + Echvi_4178 0.87 -0.1
4,995,058 - Echvi_4178 0.87 -0.2
4,995,058 - Echvi_4178 0.87 +0.9
4,995,058 - Echvi_4178 0.87 -1.4
4,995,059 + Echvi_4178 0.87 -0.3
4,995,059 + Echvi_4178 0.87 -0.9
4,995,063 + Echvi_4178 0.87 -0.3
4,995,063 + Echvi_4178 0.87 +0.5
4,995,063 + Echvi_4178 0.87 +0.8
4,995,063 + Echvi_4178 0.87 +0.2
4,995,215 + -0.2
4,995,241 + +1.8
4,995,242 - +0.9
4,995,242 - -2.2
4,995,242 - -0.2
4,995,271 + +0.3
4,995,272 - -0.5

Or see this region's nucleotide sequence