Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4126

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4125 and Echvi_4126 are separated by 93 nucleotidesEchvi_4126 and Echvi_4127 are separated by 41 nucleotides Echvi_4125: Echvi_4125 - copper-(or silver)-translocating P-type ATPase, at 4,938,444 to 4,940,681 _4125 Echvi_4126: Echvi_4126 - AraC-type DNA-binding domain-containing proteins, at 4,940,775 to 4,941,344 _4126 Echvi_4127: Echvi_4127 - copper-(or silver)-translocating P-type ATPase, at 4,941,386 to 4,943,425 _4127 Position (kb) 4940 4941 4942Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4939.851 kb on + strand, within Echvi_4125at 4939.851 kb on + strand, within Echvi_4125at 4939.852 kb on - strand, within Echvi_4125at 4939.852 kb on - strand, within Echvi_4125at 4939.852 kb on - strand, within Echvi_4125at 4939.852 kb on - strand, within Echvi_4125at 4939.852 kb on - strand, within Echvi_4125at 4939.852 kb on - strand, within Echvi_4125at 4939.854 kb on - strand, within Echvi_4125at 4939.854 kb on - strand, within Echvi_4125at 4939.855 kb on + strand, within Echvi_4125at 4939.855 kb on + strand, within Echvi_4125at 4940.076 kb on - strand, within Echvi_4125at 4940.082 kb on - strand, within Echvi_4125at 4940.098 kb on + strand, within Echvi_4125at 4940.098 kb on + strand, within Echvi_4125at 4940.099 kb on - strand, within Echvi_4125at 4940.101 kb on + strand, within Echvi_4125at 4940.101 kb on + strand, within Echvi_4125at 4940.101 kb on + strand, within Echvi_4125at 4940.102 kb on - strand, within Echvi_4125at 4940.177 kb on + strand, within Echvi_4125at 4940.177 kb on + strand, within Echvi_4125at 4940.177 kb on + strand, within Echvi_4125at 4940.177 kb on + strand, within Echvi_4125at 4940.178 kb on - strand, within Echvi_4125at 4940.183 kb on + strand, within Echvi_4125at 4940.183 kb on + strand, within Echvi_4125at 4940.187 kb on + strand, within Echvi_4125at 4940.187 kb on + strand, within Echvi_4125at 4940.188 kb on - strand, within Echvi_4125at 4940.188 kb on - strand, within Echvi_4125at 4940.188 kb on - strand, within Echvi_4125at 4940.188 kb on - strand, within Echvi_4125at 4940.188 kb on - strand, within Echvi_4125at 4940.243 kb on + strand, within Echvi_4125at 4940.247 kb on - strand, within Echvi_4125at 4940.266 kb on + strand, within Echvi_4125at 4940.285 kb on + strand, within Echvi_4125at 4940.285 kb on + strand, within Echvi_4125at 4940.286 kb on - strand, within Echvi_4125at 4940.342 kb on + strand, within Echvi_4125at 4940.347 kb on - strand, within Echvi_4125at 4940.453 kb on + strand, within Echvi_4125at 4940.454 kb on - strand, within Echvi_4125at 4940.462 kb on - strandat 4940.501 kb on + strandat 4940.520 kb on + strandat 4940.521 kb on - strandat 4940.580 kb on + strandat 4940.650 kb on - strandat 4940.703 kb on + strandat 4940.828 kb on + strandat 4940.866 kb on - strand, within Echvi_4126at 4940.870 kb on - strandat 4940.870 kb on - strand, within Echvi_4126at 4940.877 kb on - strand, within Echvi_4126at 4940.884 kb on + strand, within Echvi_4126at 4940.885 kb on - strand, within Echvi_4126at 4940.927 kb on - strand, within Echvi_4126at 4940.969 kb on + strand, within Echvi_4126at 4941.025 kb on + strand, within Echvi_4126at 4941.037 kb on - strand, within Echvi_4126at 4941.037 kb on - strand, within Echvi_4126at 4941.042 kb on - strand, within Echvi_4126at 4941.042 kb on - strand, within Echvi_4126at 4941.086 kb on + strand, within Echvi_4126at 4941.191 kb on + strand, within Echvi_4126at 4941.191 kb on + strand, within Echvi_4126at 4941.192 kb on - strand, within Echvi_4126at 4941.192 kb on - strand, within Echvi_4126at 4941.229 kb on - strand, within Echvi_4126at 4941.237 kb on + strand, within Echvi_4126at 4941.237 kb on + strand, within Echvi_4126at 4941.238 kb on - strand, within Echvi_4126at 4941.243 kb on + strand, within Echvi_4126at 4941.243 kb on + strand, within Echvi_4126at 4941.244 kb on - strand, within Echvi_4126at 4941.296 kb on + strandat 4941.320 kb on + strandat 4941.321 kb on - strandat 4941.324 kb on - strandat 4941.333 kb on + strandat 4941.334 kb on - strandat 4941.334 kb on - strandat 4941.334 kb on - strandat 4941.334 kb on - strandat 4941.338 kb on + strandat 4941.338 kb on + strandat 4941.338 kb on + strandat 4941.360 kb on + strandat 4941.361 kb on - strandat 4941.367 kb on + strandat 4941.367 kb on + strandat 4941.367 kb on + strandat 4941.367 kb on + strandat 4941.368 kb on - strandat 4941.368 kb on - strandat 4941.368 kb on - strandat 4941.368 kb on - strandat 4941.370 kb on + strandat 4941.370 kb on + strandat 4941.371 kb on - strandat 4941.371 kb on - strandat 4941.371 kb on - strandat 4941.371 kb on - strandat 4941.371 kb on - strandat 4941.378 kb on - strandat 4941.379 kb on + strandat 4941.379 kb on + strandat 4941.380 kb on - strandat 4941.387 kb on + strandat 4941.391 kb on + strandat 4941.391 kb on + strandat 4941.391 kb on + strandat 4941.440 kb on - strandat 4941.440 kb on - strandat 4941.461 kb on + strandat 4941.461 kb on + strandat 4941.462 kb on - strandat 4941.473 kb on + strandat 4941.532 kb on - strandat 4941.532 kb on - strandat 4941.532 kb on - strandat 4941.547 kb on + strandat 4941.547 kb on + strandat 4941.547 kb on + strandat 4941.547 kb on + strandat 4941.548 kb on - strandat 4941.548 kb on - strandat 4941.548 kb on - strandat 4941.566 kb on - strandat 4941.568 kb on + strandat 4941.570 kb on + strandat 4941.570 kb on + strandat 4941.571 kb on - strandat 4941.632 kb on - strand, within Echvi_4127at 4941.632 kb on - strand, within Echvi_4127at 4941.654 kb on - strand, within Echvi_4127at 4941.717 kb on - strand, within Echvi_4127at 4941.737 kb on + strand, within Echvi_4127at 4941.737 kb on + strand, within Echvi_4127at 4941.741 kb on + strand, within Echvi_4127at 4941.741 kb on + strand, within Echvi_4127at 4941.742 kb on - strand, within Echvi_4127at 4941.758 kb on + strand, within Echvi_4127at 4941.758 kb on + strand, within Echvi_4127at 4941.758 kb on + strand, within Echvi_4127at 4941.759 kb on - strand, within Echvi_4127at 4941.759 kb on - strand, within Echvi_4127at 4941.759 kb on - strand, within Echvi_4127at 4941.769 kb on + strand, within Echvi_4127at 4941.770 kb on - strand, within Echvi_4127at 4941.875 kb on + strand, within Echvi_4127at 4941.875 kb on + strand, within Echvi_4127at 4941.916 kb on + strand, within Echvi_4127at 4941.929 kb on - strand, within Echvi_4127at 4941.983 kb on + strand, within Echvi_4127at 4941.983 kb on + strand, within Echvi_4127at 4941.984 kb on - strand, within Echvi_4127at 4941.984 kb on - strand, within Echvi_4127at 4942.010 kb on - strand, within Echvi_4127at 4942.069 kb on - strand, within Echvi_4127at 4942.172 kb on - strand, within Echvi_4127at 4942.223 kb on + strand, within Echvi_4127at 4942.248 kb on + strand, within Echvi_4127at 4942.280 kb on - strand, within Echvi_4127at 4942.311 kb on - strand, within Echvi_4127

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
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4,939,851 + Echvi_4125 0.63 +0.0
4,939,851 + Echvi_4125 0.63 +1.1
4,939,852 - Echvi_4125 0.63 -0.5
4,939,852 - Echvi_4125 0.63 +0.8
4,939,852 - Echvi_4125 0.63 +0.2
4,939,852 - Echvi_4125 0.63 -0.3
4,939,852 - Echvi_4125 0.63 -0.1
4,939,852 - Echvi_4125 0.63 -0.3
4,939,854 - Echvi_4125 0.63 -0.7
4,939,854 - Echvi_4125 0.63 +1.5
4,939,855 + Echvi_4125 0.63 +0.4
4,939,855 + Echvi_4125 0.63 +1.2
4,940,076 - Echvi_4125 0.73 -2.2
4,940,082 - Echvi_4125 0.73 -1.4
4,940,098 + Echvi_4125 0.74 +0.6
4,940,098 + Echvi_4125 0.74 -0.3
4,940,099 - Echvi_4125 0.74 -0.6
4,940,101 + Echvi_4125 0.74 -0.4
4,940,101 + Echvi_4125 0.74 -2.1
4,940,101 + Echvi_4125 0.74 -0.3
4,940,102 - Echvi_4125 0.74 +0.3
4,940,177 + Echvi_4125 0.77 -0.1
4,940,177 + Echvi_4125 0.77 -1.2
4,940,177 + Echvi_4125 0.77 -0.7
4,940,177 + Echvi_4125 0.77 -0.1
4,940,178 - Echvi_4125 0.77 -0.8
4,940,183 + Echvi_4125 0.78 +0.6
4,940,183 + Echvi_4125 0.78 -0.5
4,940,187 + Echvi_4125 0.78 -0.4
4,940,187 + Echvi_4125 0.78 -0.3
4,940,188 - Echvi_4125 0.78 -1.4
4,940,188 - Echvi_4125 0.78 +0.3
4,940,188 - Echvi_4125 0.78 -0.4
4,940,188 - Echvi_4125 0.78 +0.5
4,940,188 - Echvi_4125 0.78 -0.0
4,940,243 + Echvi_4125 0.80 +0.2
4,940,247 - Echvi_4125 0.81 -2.1
4,940,266 + Echvi_4125 0.81 -0.6
4,940,285 + Echvi_4125 0.82 +0.4
4,940,285 + Echvi_4125 0.82 +0.5
4,940,286 - Echvi_4125 0.82 -0.1
4,940,342 + Echvi_4125 0.85 -1.7
4,940,347 - Echvi_4125 0.85 +0.6
4,940,453 + Echvi_4125 0.90 -0.3
4,940,454 - Echvi_4125 0.90 +0.4
4,940,462 - +0.6
4,940,501 + +0.2
4,940,520 + +0.6
4,940,521 - +0.1
4,940,580 + +1.6
4,940,650 - -0.2
4,940,703 + +0.2
4,940,828 + +0.4
4,940,866 - Echvi_4126 0.16 +0.9
4,940,870 - +1.2
4,940,870 - Echvi_4126 0.17 +0.4
4,940,877 - Echvi_4126 0.18 -1.8
4,940,884 + Echvi_4126 0.19 +0.5
4,940,885 - Echvi_4126 0.19 +0.6
4,940,927 - Echvi_4126 0.27 -0.2
4,940,969 + Echvi_4126 0.34 +1.8
4,941,025 + Echvi_4126 0.44 -0.6
4,941,037 - Echvi_4126 0.46 +0.9
4,941,037 - Echvi_4126 0.46 +0.5
4,941,042 - Echvi_4126 0.47 +0.0
4,941,042 - Echvi_4126 0.47 +0.2
4,941,086 + Echvi_4126 0.55 -0.6
4,941,191 + Echvi_4126 0.73 +0.3
4,941,191 + Echvi_4126 0.73 -1.4
4,941,192 - Echvi_4126 0.73 +1.5
4,941,192 - Echvi_4126 0.73 +2.0
4,941,229 - Echvi_4126 0.80 -1.3
4,941,237 + Echvi_4126 0.81 +0.2
4,941,237 + Echvi_4126 0.81 +0.4
4,941,238 - Echvi_4126 0.81 -0.4
4,941,243 + Echvi_4126 0.82 +0.4
4,941,243 + Echvi_4126 0.82 +1.4
4,941,244 - Echvi_4126 0.82 +2.0
4,941,296 + -0.1
4,941,320 + +0.1
4,941,321 - +0.4
4,941,324 - -0.0
4,941,333 + +2.8
4,941,334 - -0.4
4,941,334 - +0.2
4,941,334 - +1.0
4,941,334 - -1.1
4,941,338 + +0.6
4,941,338 + +0.9
4,941,338 + -0.4
4,941,360 + -1.7
4,941,361 - +0.5
4,941,367 + +0.4
4,941,367 + +0.3
4,941,367 + -0.2
4,941,367 + -0.2
4,941,368 - +0.1
4,941,368 - -0.1
4,941,368 - +0.1
4,941,368 - -0.2
4,941,370 + -0.8
4,941,370 + -1.9
4,941,371 - -0.3
4,941,371 - +0.1
4,941,371 - +0.3
4,941,371 - +0.4
4,941,371 - -0.9
4,941,378 - -1.7
4,941,379 + -0.7
4,941,379 + -2.8
4,941,380 - -0.4
4,941,387 + -0.7
4,941,391 + -3.1
4,941,391 + -0.6
4,941,391 + +0.5
4,941,440 - -0.1
4,941,440 - +0.9
4,941,461 + -0.2
4,941,461 + -0.0
4,941,462 - -0.9
4,941,473 + -0.6
4,941,532 - +0.3
4,941,532 - -1.2
4,941,532 - +0.4
4,941,547 + -0.2
4,941,547 + +1.2
4,941,547 + -1.4
4,941,547 + -0.1
4,941,548 - +1.4
4,941,548 - +1.4
4,941,548 - +1.1
4,941,566 - +0.4
4,941,568 + +0.6
4,941,570 + +0.0
4,941,570 + -0.1
4,941,571 - +0.9
4,941,632 - Echvi_4127 0.12 +0.6
4,941,632 - Echvi_4127 0.12 -0.3
4,941,654 - Echvi_4127 0.13 -0.4
4,941,717 - Echvi_4127 0.16 -1.0
4,941,737 + Echvi_4127 0.17 -0.3
4,941,737 + Echvi_4127 0.17 +0.4
4,941,741 + Echvi_4127 0.17 +0.4
4,941,741 + Echvi_4127 0.17 +0.5
4,941,742 - Echvi_4127 0.17 +0.0
4,941,758 + Echvi_4127 0.18 +0.2
4,941,758 + Echvi_4127 0.18 -0.7
4,941,758 + Echvi_4127 0.18 -1.1
4,941,759 - Echvi_4127 0.18 +0.2
4,941,759 - Echvi_4127 0.18 +1.8
4,941,759 - Echvi_4127 0.18 +2.1
4,941,769 + Echvi_4127 0.19 -0.6
4,941,770 - Echvi_4127 0.19 +0.7
4,941,875 + Echvi_4127 0.24 -0.0
4,941,875 + Echvi_4127 0.24 -0.5
4,941,916 + Echvi_4127 0.26 +0.5
4,941,929 - Echvi_4127 0.27 -1.9
4,941,983 + Echvi_4127 0.29 +0.1
4,941,983 + Echvi_4127 0.29 -1.2
4,941,984 - Echvi_4127 0.29 -0.9
4,941,984 - Echvi_4127 0.29 -1.4
4,942,010 - Echvi_4127 0.31 +0.6
4,942,069 - Echvi_4127 0.33 -1.1
4,942,172 - Echvi_4127 0.39 -0.1
4,942,223 + Echvi_4127 0.41 +1.0
4,942,248 + Echvi_4127 0.42 +1.3
4,942,280 - Echvi_4127 0.44 +1.8
4,942,311 - Echvi_4127 0.45 -0.6

Or see this region's nucleotide sequence