Experiment: m.b. Dimethyl Sulfoxide 12 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2472 and Echvi_2473 are separated by 145 nucleotides Echvi_2473 and Echvi_2474 are separated by 396 nucleotides
Echvi_2472: Echvi_2472 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,932,548 to 2,935,724
_2472
Echvi_2473: Echvi_2473 - RND family efflux transporter, MFP subunit, at 2,935,870 to 2,937,027
_2473
Echvi_2474: Echvi_2474 - Diaminopimelate decarboxylase, at 2,937,424 to 2,938,812
_2474
Position (kb)
2935
2936
2937
2938 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2934.910 kb on + strand, within Echvi_2472 at 2934.910 kb on + strand, within Echvi_2472 at 2934.911 kb on - strand, within Echvi_2472 at 2934.914 kb on + strand, within Echvi_2472 at 2934.915 kb on - strand, within Echvi_2472 at 2935.113 kb on - strand, within Echvi_2472 at 2935.113 kb on - strand, within Echvi_2472 at 2935.114 kb on + strand, within Echvi_2472 at 2935.114 kb on + strand, within Echvi_2472 at 2935.114 kb on + strand, within Echvi_2472 at 2935.114 kb on + strand, within Echvi_2472 at 2935.114 kb on + strand, within Echvi_2472 at 2935.114 kb on + strand, within Echvi_2472 at 2935.115 kb on - strand, within Echvi_2472 at 2935.115 kb on - strand, within Echvi_2472 at 2935.115 kb on - strand, within Echvi_2472 at 2935.115 kb on - strand, within Echvi_2472 at 2935.115 kb on - strand, within Echvi_2472 at 2935.115 kb on - strand, within Echvi_2472 at 2935.116 kb on + strand, within Echvi_2472 at 2935.116 kb on + strand, within Echvi_2472 at 2935.116 kb on + strand, within Echvi_2472 at 2935.117 kb on - strand, within Echvi_2472 at 2935.117 kb on - strand, within Echvi_2472 at 2935.117 kb on - strand, within Echvi_2472 at 2935.180 kb on + strand, within Echvi_2472 at 2935.258 kb on + strand, within Echvi_2472 at 2935.258 kb on + strand, within Echvi_2472 at 2935.285 kb on - strand, within Echvi_2472 at 2935.285 kb on - strand, within Echvi_2472 at 2935.313 kb on + strand, within Echvi_2472 at 2935.314 kb on - strand, within Echvi_2472 at 2935.360 kb on - strand, within Echvi_2472 at 2935.447 kb on + strand at 2935.495 kb on + strand at 2935.495 kb on + strand at 2935.495 kb on + strand at 2935.518 kb on + strand at 2935.518 kb on + strand at 2935.519 kb on - strand at 2935.583 kb on - strand at 2935.583 kb on - strand at 2935.712 kb on + strand at 2935.729 kb on + strand at 2935.729 kb on + strand at 2935.745 kb on + strand at 2935.851 kb on + strand at 2935.950 kb on + strand at 2935.951 kb on - strand at 2936.044 kb on - strand, within Echvi_2473 at 2936.085 kb on + strand, within Echvi_2473 at 2936.086 kb on - strand, within Echvi_2473 at 2936.094 kb on + strand, within Echvi_2473 at 2936.168 kb on - strand, within Echvi_2473 at 2936.257 kb on + strand, within Echvi_2473 at 2936.263 kb on - strand, within Echvi_2473 at 2936.263 kb on - strand, within Echvi_2473 at 2936.263 kb on - strand, within Echvi_2473 at 2936.268 kb on - strand, within Echvi_2473 at 2936.268 kb on - strand, within Echvi_2473 at 2936.268 kb on - strand, within Echvi_2473 at 2936.284 kb on + strand, within Echvi_2473 at 2936.285 kb on - strand, within Echvi_2473 at 2936.285 kb on - strand, within Echvi_2473 at 2936.297 kb on - strand, within Echvi_2473 at 2936.346 kb on - strand, within Echvi_2473 at 2936.346 kb on - strand, within Echvi_2473 at 2936.349 kb on - strand, within Echvi_2473 at 2936.384 kb on + strand, within Echvi_2473 at 2936.385 kb on - strand, within Echvi_2473 at 2936.446 kb on - strand, within Echvi_2473 at 2936.449 kb on + strand, within Echvi_2473 at 2936.472 kb on + strand, within Echvi_2473 at 2936.482 kb on + strand, within Echvi_2473 at 2936.482 kb on + strand, within Echvi_2473 at 2936.527 kb on - strand, within Echvi_2473 at 2936.720 kb on + strand, within Echvi_2473 at 2936.720 kb on + strand, within Echvi_2473 at 2936.721 kb on - strand, within Echvi_2473 at 2936.721 kb on - strand, within Echvi_2473 at 2936.779 kb on + strand, within Echvi_2473 at 2936.783 kb on + strand, within Echvi_2473 at 2936.783 kb on + strand, within Echvi_2473 at 2936.825 kb on - strand, within Echvi_2473 at 2936.842 kb on + strand, within Echvi_2473 at 2936.843 kb on - strand, within Echvi_2473 at 2936.855 kb on + strand, within Echvi_2473 at 2936.856 kb on - strand, within Echvi_2473 at 2937.010 kb on + strand at 2937.011 kb on - strand at 2937.015 kb on + strand at 2937.016 kb on - strand at 2937.016 kb on - strand at 2937.016 kb on - strand at 2937.042 kb on - strand at 2937.077 kb on - strand at 2937.140 kb on - strand at 2937.326 kb on + strand at 2937.358 kb on + strand at 2937.508 kb on - strand at 2937.515 kb on + strand at 2937.541 kb on + strand at 2937.542 kb on - strand at 2937.565 kb on + strand, within Echvi_2474 at 2937.613 kb on - strand, within Echvi_2474 at 2937.637 kb on + strand, within Echvi_2474 at 2937.637 kb on + strand, within Echvi_2474 at 2937.655 kb on + strand, within Echvi_2474 at 2937.655 kb on + strand, within Echvi_2474 at 2937.656 kb on - strand, within Echvi_2474 at 2937.661 kb on + strand, within Echvi_2474 at 2937.667 kb on - strand, within Echvi_2474 at 2937.795 kb on + strand, within Echvi_2474 at 2937.832 kb on + strand, within Echvi_2474 at 2937.833 kb on - strand, within Echvi_2474 at 2937.841 kb on + strand, within Echvi_2474 at 2937.842 kb on - strand, within Echvi_2474 at 2937.843 kb on + strand, within Echvi_2474 at 2937.916 kb on + strand, within Echvi_2474 at 2938.015 kb on + strand, within Echvi_2474 at 2938.024 kb on - strand, within Echvi_2474
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol% remove 2,934,910 + Echvi_2472 0.74 -0.1 2,934,910 + Echvi_2472 0.74 -0.2 2,934,911 - Echvi_2472 0.74 -1.0 2,934,914 + Echvi_2472 0.74 -2.6 2,934,915 - Echvi_2472 0.75 -1.0 2,935,113 - Echvi_2472 0.81 -0.5 2,935,113 - Echvi_2472 0.81 +0.2 2,935,114 + Echvi_2472 0.81 -0.6 2,935,114 + Echvi_2472 0.81 -2.5 2,935,114 + Echvi_2472 0.81 +0.2 2,935,114 + Echvi_2472 0.81 -0.3 2,935,114 + Echvi_2472 0.81 +1.8 2,935,114 + Echvi_2472 0.81 -0.8 2,935,115 - Echvi_2472 0.81 -2.1 2,935,115 - Echvi_2472 0.81 -1.4 2,935,115 - Echvi_2472 0.81 +0.9 2,935,115 - Echvi_2472 0.81 -1.5 2,935,115 - Echvi_2472 0.81 -1.6 2,935,115 - Echvi_2472 0.81 +0.3 2,935,116 + Echvi_2472 0.81 -0.7 2,935,116 + Echvi_2472 0.81 -0.1 2,935,116 + Echvi_2472 0.81 +0.3 2,935,117 - Echvi_2472 0.81 -0.9 2,935,117 - Echvi_2472 0.81 -0.2 2,935,117 - Echvi_2472 0.81 -1.4 2,935,180 + Echvi_2472 0.83 +1.4 2,935,258 + Echvi_2472 0.85 -1.5 2,935,258 + Echvi_2472 0.85 -0.4 2,935,285 - Echvi_2472 0.86 +1.2 2,935,285 - Echvi_2472 0.86 -0.4 2,935,313 + Echvi_2472 0.87 -0.5 2,935,314 - Echvi_2472 0.87 -0.7 2,935,360 - Echvi_2472 0.89 -1.0 2,935,447 + -1.1 2,935,495 + -1.2 2,935,495 + +0.0 2,935,495 + -0.9 2,935,518 + -0.3 2,935,518 + -3.8 2,935,519 - -0.7 2,935,583 - -2.2 2,935,583 - -0.7 2,935,712 + +1.8 2,935,729 + -0.0 2,935,729 + +0.6 2,935,745 + +0.5 2,935,851 + -0.9 2,935,950 + -0.6 2,935,951 - -0.7 2,936,044 - Echvi_2473 0.15 +0.8 2,936,085 + Echvi_2473 0.19 -1.6 2,936,086 - Echvi_2473 0.19 -0.9 2,936,094 + Echvi_2473 0.19 -0.0 2,936,168 - Echvi_2473 0.26 -0.3 2,936,257 + Echvi_2473 0.33 +0.3 2,936,263 - Echvi_2473 0.34 -0.4 2,936,263 - Echvi_2473 0.34 -0.4 2,936,263 - Echvi_2473 0.34 -0.4 2,936,268 - Echvi_2473 0.34 -1.5 2,936,268 - Echvi_2473 0.34 -0.3 2,936,268 - Echvi_2473 0.34 -1.5 2,936,284 + Echvi_2473 0.36 -0.8 2,936,285 - Echvi_2473 0.36 -1.7 2,936,285 - Echvi_2473 0.36 +0.3 2,936,297 - Echvi_2473 0.37 +1.4 2,936,346 - Echvi_2473 0.41 -1.0 2,936,346 - Echvi_2473 0.41 -0.9 2,936,349 - Echvi_2473 0.41 -0.6 2,936,384 + Echvi_2473 0.44 +0.2 2,936,385 - Echvi_2473 0.44 +0.8 2,936,446 - Echvi_2473 0.50 +0.5 2,936,449 + Echvi_2473 0.50 -0.7 2,936,472 + Echvi_2473 0.52 -0.6 2,936,482 + Echvi_2473 0.53 -1.3 2,936,482 + Echvi_2473 0.53 -1.0 2,936,527 - Echvi_2473 0.57 -0.5 2,936,720 + Echvi_2473 0.73 +0.1 2,936,720 + Echvi_2473 0.73 +0.6 2,936,721 - Echvi_2473 0.73 +1.2 2,936,721 - Echvi_2473 0.73 -1.0 2,936,779 + Echvi_2473 0.78 -1.2 2,936,783 + Echvi_2473 0.79 +0.4 2,936,783 + Echvi_2473 0.79 -1.4 2,936,825 - Echvi_2473 0.82 +0.2 2,936,842 + Echvi_2473 0.84 -0.9 2,936,843 - Echvi_2473 0.84 -3.1 2,936,855 + Echvi_2473 0.85 -1.2 2,936,856 - Echvi_2473 0.85 -0.3 2,937,010 + -0.6 2,937,011 - +0.5 2,937,015 + -0.3 2,937,016 - -0.8 2,937,016 - +0.4 2,937,016 - -1.4 2,937,042 - +0.2 2,937,077 - -0.5 2,937,140 - -0.8 2,937,326 + -1.4 2,937,358 + -1.1 2,937,508 - +1.0 2,937,515 + +0.8 2,937,541 + -0.4 2,937,542 - -0.0 2,937,565 + Echvi_2474 0.10 +1.2 2,937,613 - Echvi_2474 0.14 -0.8 2,937,637 + Echvi_2474 0.15 -0.1 2,937,637 + Echvi_2474 0.15 +0.7 2,937,655 + Echvi_2474 0.17 -1.1 2,937,655 + Echvi_2474 0.17 -0.8 2,937,656 - Echvi_2474 0.17 +0.7 2,937,661 + Echvi_2474 0.17 +1.3 2,937,667 - Echvi_2474 0.17 +2.4 2,937,795 + Echvi_2474 0.27 +2.8 2,937,832 + Echvi_2474 0.29 -0.3 2,937,833 - Echvi_2474 0.29 +1.2 2,937,841 + Echvi_2474 0.30 +1.1 2,937,842 - Echvi_2474 0.30 -0.4 2,937,843 + Echvi_2474 0.30 -2.8 2,937,916 + Echvi_2474 0.35 +1.2 2,938,015 + Echvi_2474 0.43 -0.0 2,938,024 - Echvi_2474 0.43 +1.7
Or see this region's nucleotide sequence