Experiment: m.b. Dimethyl Sulfoxide 12 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2469 and Echvi_2470 are separated by 509 nucleotides Echvi_2470 and Echvi_2471 are separated by 87 nucleotides Echvi_2471 and Echvi_2472 are separated by 2 nucleotides
Echvi_2469: Echvi_2469 - hypothetical protein, at 2,929,691 to 2,930,320
_2469
Echvi_2470: Echvi_2470 - hypothetical protein, at 2,930,830 to 2,930,997
_2470
Echvi_2471: Echvi_2471 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,931,085 to 2,932,545
_2471
Echvi_2472: Echvi_2472 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,932,548 to 2,935,724
_2472
Position (kb)
2931
2932
2933 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2930.107 kb on + strand, within Echvi_2469 at 2930.107 kb on + strand, within Echvi_2469 at 2930.107 kb on + strand, within Echvi_2469 at 2930.107 kb on + strand, within Echvi_2469 at 2930.193 kb on - strand, within Echvi_2469 at 2930.247 kb on + strand, within Echvi_2469 at 2930.323 kb on + strand at 2930.323 kb on + strand at 2930.323 kb on + strand at 2930.328 kb on + strand at 2930.329 kb on - strand at 2930.342 kb on + strand at 2930.343 kb on - strand at 2930.345 kb on + strand at 2930.351 kb on + strand at 2930.354 kb on + strand at 2930.431 kb on + strand at 2930.482 kb on - strand at 2930.488 kb on - strand at 2930.493 kb on - strand at 2930.493 kb on - strand at 2930.502 kb on - strand at 2930.523 kb on - strand at 2930.523 kb on - strand at 2930.584 kb on + strand at 2930.584 kb on + strand at 2930.584 kb on + strand at 2930.584 kb on + strand at 2930.594 kb on + strand at 2930.647 kb on - strand at 2930.653 kb on + strand at 2930.653 kb on + strand at 2930.654 kb on - strand at 2930.659 kb on + strand at 2930.719 kb on + strand at 2930.719 kb on + strand at 2930.740 kb on + strand at 2930.740 kb on + strand at 2930.740 kb on + strand at 2930.749 kb on + strand at 2930.772 kb on + strand at 2930.772 kb on + strand at 2930.773 kb on - strand at 2930.773 kb on - strand at 2930.777 kb on - strand at 2930.788 kb on + strand at 2930.819 kb on - strand at 2930.922 kb on - strand, within Echvi_2470 at 2930.925 kb on + strand, within Echvi_2470 at 2930.925 kb on + strand, within Echvi_2470 at 2930.926 kb on - strand, within Echvi_2470 at 2930.926 kb on - strand, within Echvi_2470 at 2930.926 kb on - strand, within Echvi_2470 at 2930.979 kb on + strand, within Echvi_2470 at 2931.001 kb on - strand at 2931.148 kb on + strand at 2931.149 kb on - strand at 2931.154 kb on + strand at 2931.249 kb on + strand, within Echvi_2471 at 2931.288 kb on + strand, within Echvi_2471 at 2931.291 kb on + strand, within Echvi_2471 at 2931.397 kb on - strand, within Echvi_2471 at 2931.406 kb on + strand, within Echvi_2471 at 2931.406 kb on + strand, within Echvi_2471 at 2931.526 kb on + strand, within Echvi_2471 at 2931.555 kb on - strand, within Echvi_2471 at 2931.589 kb on - strand, within Echvi_2471 at 2931.589 kb on - strand, within Echvi_2471 at 2931.592 kb on + strand, within Echvi_2471 at 2931.592 kb on + strand, within Echvi_2471 at 2931.593 kb on - strand, within Echvi_2471 at 2931.603 kb on + strand, within Echvi_2471 at 2931.603 kb on + strand, within Echvi_2471 at 2931.603 kb on + strand, within Echvi_2471 at 2931.666 kb on - strand, within Echvi_2471 at 2931.685 kb on - strand, within Echvi_2471 at 2931.741 kb on + strand, within Echvi_2471 at 2931.741 kb on + strand, within Echvi_2471 at 2931.742 kb on - strand, within Echvi_2471 at 2931.742 kb on - strand, within Echvi_2471 at 2931.784 kb on + strand, within Echvi_2471 at 2931.785 kb on - strand, within Echvi_2471 at 2931.899 kb on + strand, within Echvi_2471 at 2931.899 kb on + strand, within Echvi_2471 at 2931.903 kb on + strand, within Echvi_2471 at 2931.914 kb on - strand, within Echvi_2471 at 2931.946 kb on + strand, within Echvi_2471 at 2931.946 kb on + strand, within Echvi_2471 at 2931.950 kb on + strand, within Echvi_2471 at 2931.950 kb on + strand, within Echvi_2471 at 2931.950 kb on + strand, within Echvi_2471 at 2931.985 kb on + strand, within Echvi_2471 at 2931.986 kb on - strand, within Echvi_2471 at 2931.986 kb on - strand, within Echvi_2471 at 2931.997 kb on - strand, within Echvi_2471 at 2932.094 kb on - strand, within Echvi_2471 at 2932.094 kb on - strand, within Echvi_2471 at 2932.097 kb on + strand, within Echvi_2471 at 2932.097 kb on + strand, within Echvi_2471 at 2932.098 kb on - strand, within Echvi_2471 at 2932.113 kb on + strand, within Echvi_2471 at 2932.113 kb on + strand, within Echvi_2471 at 2932.114 kb on - strand, within Echvi_2471 at 2932.114 kb on - strand, within Echvi_2471 at 2932.125 kb on + strand, within Echvi_2471 at 2932.125 kb on + strand, within Echvi_2471 at 2932.125 kb on + strand, within Echvi_2471 at 2932.169 kb on + strand, within Echvi_2471 at 2932.169 kb on + strand, within Echvi_2471 at 2932.169 kb on + strand, within Echvi_2471 at 2932.176 kb on + strand, within Echvi_2471 at 2932.176 kb on + strand, within Echvi_2471 at 2932.177 kb on - strand, within Echvi_2471 at 2932.178 kb on + strand, within Echvi_2471 at 2932.181 kb on + strand, within Echvi_2471 at 2932.182 kb on - strand, within Echvi_2471 at 2932.193 kb on + strand, within Echvi_2471 at 2932.193 kb on + strand, within Echvi_2471 at 2932.193 kb on + strand, within Echvi_2471 at 2932.194 kb on - strand, within Echvi_2471 at 2932.204 kb on - strand, within Echvi_2471 at 2932.204 kb on - strand, within Echvi_2471 at 2932.206 kb on - strand, within Echvi_2471 at 2932.258 kb on + strand, within Echvi_2471 at 2932.273 kb on + strand, within Echvi_2471 at 2932.273 kb on + strand, within Echvi_2471 at 2932.273 kb on + strand, within Echvi_2471 at 2932.273 kb on + strand, within Echvi_2471 at 2932.274 kb on - strand, within Echvi_2471 at 2932.362 kb on - strand, within Echvi_2471 at 2932.362 kb on - strand, within Echvi_2471 at 2932.396 kb on - strand, within Echvi_2471 at 2932.436 kb on + strand at 2932.437 kb on - strand at 2932.437 kb on - strand at 2932.465 kb on - strand at 2932.465 kb on - strand at 2932.467 kb on + strand at 2932.467 kb on + strand at 2932.469 kb on + strand at 2932.469 kb on + strand at 2932.470 kb on - strand at 2932.486 kb on - strand at 2932.501 kb on + strand at 2932.504 kb on + strand at 2932.515 kb on + strand at 2932.515 kb on + strand at 2932.545 kb on + strand at 2932.545 kb on + strand at 2932.546 kb on - strand at 2932.546 kb on - strand at 2932.549 kb on + strand at 2932.576 kb on + strand at 2932.576 kb on + strand at 2932.576 kb on + strand at 2932.576 kb on + strand at 2932.577 kb on - strand at 2932.577 kb on - strand at 2932.601 kb on + strand at 2932.602 kb on - strand at 2932.603 kb on + strand at 2932.603 kb on + strand at 2932.603 kb on + strand at 2932.664 kb on + strand at 2932.670 kb on + strand at 2932.670 kb on + strand at 2932.808 kb on + strand at 2932.808 kb on + strand at 2932.809 kb on - strand at 2932.893 kb on + strand, within Echvi_2472 at 2932.894 kb on - strand, within Echvi_2472 at 2932.894 kb on - strand, within Echvi_2472 at 2932.903 kb on + strand, within Echvi_2472 at 2932.907 kb on + strand at 2932.907 kb on + strand, within Echvi_2472 at 2932.908 kb on - strand, within Echvi_2472 at 2932.908 kb on - strand, within Echvi_2472 at 2932.908 kb on - strand, within Echvi_2472 at 2932.935 kb on - strand, within Echvi_2472 at 2932.938 kb on + strand, within Echvi_2472 at 2932.938 kb on + strand, within Echvi_2472 at 2932.955 kb on + strand, within Echvi_2472 at 2932.956 kb on - strand, within Echvi_2472 at 2933.027 kb on - strand, within Echvi_2472 at 2933.027 kb on - strand, within Echvi_2472 at 2933.039 kb on + strand, within Echvi_2472 at 2933.039 kb on + strand, within Echvi_2472 at 2933.039 kb on + strand, within Echvi_2472 at 2933.040 kb on - strand, within Echvi_2472 at 2933.096 kb on + strand, within Echvi_2472 at 2933.096 kb on + strand, within Echvi_2472 at 2933.096 kb on + strand, within Echvi_2472 at 2933.097 kb on - strand, within Echvi_2472 at 2933.132 kb on + strand, within Echvi_2472 at 2933.132 kb on + strand, within Echvi_2472 at 2933.133 kb on - strand, within Echvi_2472 at 2933.136 kb on - strand, within Echvi_2472 at 2933.218 kb on + strand, within Echvi_2472 at 2933.218 kb on + strand, within Echvi_2472 at 2933.218 kb on + strand, within Echvi_2472 at 2933.219 kb on - strand, within Echvi_2472 at 2933.219 kb on - strand, within Echvi_2472 at 2933.219 kb on - strand, within Echvi_2472 at 2933.226 kb on - strand, within Echvi_2472 at 2933.228 kb on - strand, within Echvi_2472 at 2933.252 kb on - strand, within Echvi_2472 at 2933.368 kb on + strand, within Echvi_2472 at 2933.368 kb on + strand, within Echvi_2472 at 2933.368 kb on + strand, within Echvi_2472 at 2933.368 kb on + strand, within Echvi_2472 at 2933.369 kb on - strand, within Echvi_2472 at 2933.369 kb on - strand, within Echvi_2472 at 2933.369 kb on - strand, within Echvi_2472 at 2933.369 kb on - strand, within Echvi_2472 at 2933.370 kb on + strand, within Echvi_2472 at 2933.370 kb on + strand, within Echvi_2472 at 2933.370 kb on + strand, within Echvi_2472 at 2933.371 kb on - strand, within Echvi_2472 at 2933.371 kb on - strand, within Echvi_2472 at 2933.371 kb on - strand, within Echvi_2472 at 2933.377 kb on + strand, within Echvi_2472 at 2933.378 kb on - strand, within Echvi_2472 at 2933.378 kb on - strand, within Echvi_2472 at 2933.426 kb on + strand, within Echvi_2472 at 2933.427 kb on - strand, within Echvi_2472 at 2933.439 kb on - strand, within Echvi_2472
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol% remove 2,930,107 + Echvi_2469 0.66 -1.0 2,930,107 + Echvi_2469 0.66 +2.8 2,930,107 + Echvi_2469 0.66 +0.4 2,930,107 + Echvi_2469 0.66 +0.8 2,930,193 - Echvi_2469 0.80 -1.0 2,930,247 + Echvi_2469 0.88 -0.3 2,930,323 + +0.9 2,930,323 + -0.2 2,930,323 + -0.2 2,930,328 + +1.2 2,930,329 - -1.4 2,930,342 + -2.5 2,930,343 - -0.8 2,930,345 + +1.8 2,930,351 + +1.4 2,930,354 + +0.1 2,930,431 + +2.4 2,930,482 - -0.7 2,930,488 - +0.5 2,930,493 - +0.9 2,930,493 - +2.2 2,930,502 - +1.5 2,930,523 - -0.0 2,930,523 - +1.2 2,930,584 + -0.0 2,930,584 + +0.3 2,930,584 + +0.1 2,930,584 + -3.5 2,930,594 + +1.8 2,930,647 - +2.3 2,930,653 + +0.1 2,930,653 + +1.2 2,930,654 - -0.5 2,930,659 + +1.6 2,930,719 + +0.5 2,930,719 + +0.6 2,930,740 + -0.4 2,930,740 + -0.8 2,930,740 + -0.9 2,930,749 + +0.3 2,930,772 + -0.0 2,930,772 + +0.5 2,930,773 - -1.4 2,930,773 - +0.5 2,930,777 - -0.2 2,930,788 + -0.6 2,930,819 - +1.6 2,930,922 - Echvi_2470 0.55 -0.4 2,930,925 + Echvi_2470 0.57 -0.8 2,930,925 + Echvi_2470 0.57 -0.1 2,930,926 - Echvi_2470 0.57 -0.2 2,930,926 - Echvi_2470 0.57 -1.3 2,930,926 - Echvi_2470 0.57 -0.2 2,930,979 + Echvi_2470 0.89 +0.7 2,931,001 - -0.2 2,931,148 + -1.0 2,931,149 - -1.1 2,931,154 + -0.0 2,931,249 + Echvi_2471 0.11 -1.0 2,931,288 + Echvi_2471 0.14 +1.8 2,931,291 + Echvi_2471 0.14 -0.3 2,931,397 - Echvi_2471 0.21 +0.1 2,931,406 + Echvi_2471 0.22 +0.8 2,931,406 + Echvi_2471 0.22 -0.4 2,931,526 + Echvi_2471 0.30 -0.5 2,931,555 - Echvi_2471 0.32 +1.8 2,931,589 - Echvi_2471 0.34 -0.5 2,931,589 - Echvi_2471 0.34 -0.6 2,931,592 + Echvi_2471 0.35 -1.5 2,931,592 + Echvi_2471 0.35 -1.8 2,931,593 - Echvi_2471 0.35 +1.8 2,931,603 + Echvi_2471 0.35 +1.2 2,931,603 + Echvi_2471 0.35 -0.5 2,931,603 + Echvi_2471 0.35 -0.3 2,931,666 - Echvi_2471 0.40 -2.2 2,931,685 - Echvi_2471 0.41 -1.1 2,931,741 + Echvi_2471 0.45 +1.5 2,931,741 + Echvi_2471 0.45 +0.0 2,931,742 - Echvi_2471 0.45 -1.6 2,931,742 - Echvi_2471 0.45 +0.2 2,931,784 + Echvi_2471 0.48 +0.2 2,931,785 - Echvi_2471 0.48 -2.1 2,931,899 + Echvi_2471 0.56 +0.4 2,931,899 + Echvi_2471 0.56 -1.0 2,931,903 + Echvi_2471 0.56 +1.6 2,931,914 - Echvi_2471 0.57 -0.9 2,931,946 + Echvi_2471 0.59 -2.1 2,931,946 + Echvi_2471 0.59 +0.4 2,931,950 + Echvi_2471 0.59 +0.2 2,931,950 + Echvi_2471 0.59 -2.0 2,931,950 + Echvi_2471 0.59 +1.1 2,931,985 + Echvi_2471 0.62 -0.5 2,931,986 - Echvi_2471 0.62 -0.4 2,931,986 - Echvi_2471 0.62 -1.3 2,931,997 - Echvi_2471 0.62 -0.7 2,932,094 - Echvi_2471 0.69 -0.3 2,932,094 - Echvi_2471 0.69 -0.1 2,932,097 + Echvi_2471 0.69 -1.0 2,932,097 + Echvi_2471 0.69 -1.1 2,932,098 - Echvi_2471 0.69 +0.2 2,932,113 + Echvi_2471 0.70 -0.8 2,932,113 + Echvi_2471 0.70 -0.6 2,932,114 - Echvi_2471 0.70 -0.0 2,932,114 - Echvi_2471 0.70 -0.5 2,932,125 + Echvi_2471 0.71 -1.3 2,932,125 + Echvi_2471 0.71 -0.3 2,932,125 + Echvi_2471 0.71 -0.0 2,932,169 + Echvi_2471 0.74 -1.2 2,932,169 + Echvi_2471 0.74 +0.2 2,932,169 + Echvi_2471 0.74 +0.8 2,932,176 + Echvi_2471 0.75 -0.2 2,932,176 + Echvi_2471 0.75 +1.8 2,932,177 - Echvi_2471 0.75 -0.9 2,932,178 + Echvi_2471 0.75 +0.2 2,932,181 + Echvi_2471 0.75 -0.9 2,932,182 - Echvi_2471 0.75 -0.3 2,932,193 + Echvi_2471 0.76 -0.4 2,932,193 + Echvi_2471 0.76 +1.3 2,932,193 + Echvi_2471 0.76 -0.8 2,932,194 - Echvi_2471 0.76 -0.8 2,932,204 - Echvi_2471 0.77 -0.4 2,932,204 - Echvi_2471 0.77 +0.7 2,932,206 - Echvi_2471 0.77 -1.7 2,932,258 + Echvi_2471 0.80 -0.2 2,932,273 + Echvi_2471 0.81 -0.6 2,932,273 + Echvi_2471 0.81 -1.6 2,932,273 + Echvi_2471 0.81 +0.1 2,932,273 + Echvi_2471 0.81 +1.2 2,932,274 - Echvi_2471 0.81 -1.2 2,932,362 - Echvi_2471 0.87 -1.5 2,932,362 - Echvi_2471 0.87 +0.1 2,932,396 - Echvi_2471 0.90 -1.3 2,932,436 + -0.9 2,932,437 - -2.0 2,932,437 - -1.2 2,932,465 - -1.3 2,932,465 - -2.5 2,932,467 + +1.1 2,932,467 + -1.0 2,932,469 + -0.1 2,932,469 + +0.6 2,932,470 - +0.8 2,932,486 - -0.4 2,932,501 + -3.3 2,932,504 + +0.2 2,932,515 + -0.8 2,932,515 + -0.2 2,932,545 + -0.2 2,932,545 + +0.5 2,932,546 - +0.1 2,932,546 - -0.3 2,932,549 + -0.7 2,932,576 + +0.5 2,932,576 + -0.0 2,932,576 + -0.5 2,932,576 + -1.1 2,932,577 - -0.8 2,932,577 - -0.9 2,932,601 + +1.5 2,932,602 - -0.3 2,932,603 + -1.9 2,932,603 + +0.5 2,932,603 + -1.0 2,932,664 + -1.9 2,932,670 + -1.5 2,932,670 + -2.5 2,932,808 + +0.2 2,932,808 + -2.3 2,932,809 - -0.1 2,932,893 + Echvi_2472 0.11 -0.8 2,932,894 - Echvi_2472 0.11 -0.6 2,932,894 - Echvi_2472 0.11 +2.4 2,932,903 + Echvi_2472 0.11 -2.1 2,932,907 + +0.8 2,932,907 + Echvi_2472 0.11 +1.8 2,932,908 - Echvi_2472 0.11 -0.1 2,932,908 - Echvi_2472 0.11 -0.6 2,932,908 - Echvi_2472 0.11 +1.8 2,932,935 - Echvi_2472 0.12 -1.9 2,932,938 + Echvi_2472 0.12 -1.0 2,932,938 + Echvi_2472 0.12 -0.7 2,932,955 + Echvi_2472 0.13 -2.9 2,932,956 - Echvi_2472 0.13 +1.8 2,933,027 - Echvi_2472 0.15 +0.4 2,933,027 - Echvi_2472 0.15 -0.9 2,933,039 + Echvi_2472 0.15 -0.5 2,933,039 + Echvi_2472 0.15 -1.4 2,933,039 + Echvi_2472 0.15 -2.6 2,933,040 - Echvi_2472 0.15 -1.5 2,933,096 + Echvi_2472 0.17 -0.2 2,933,096 + Echvi_2472 0.17 +0.7 2,933,096 + Echvi_2472 0.17 -0.8 2,933,097 - Echvi_2472 0.17 +0.0 2,933,132 + Echvi_2472 0.18 -2.9 2,933,132 + Echvi_2472 0.18 -0.8 2,933,133 - Echvi_2472 0.18 -0.6 2,933,136 - Echvi_2472 0.19 -0.7 2,933,218 + Echvi_2472 0.21 -0.4 2,933,218 + Echvi_2472 0.21 -0.9 2,933,218 + Echvi_2472 0.21 -1.2 2,933,219 - Echvi_2472 0.21 +0.5 2,933,219 - Echvi_2472 0.21 +0.1 2,933,219 - Echvi_2472 0.21 -1.2 2,933,226 - Echvi_2472 0.21 +1.4 2,933,228 - Echvi_2472 0.21 -2.2 2,933,252 - Echvi_2472 0.22 +0.3 2,933,368 + Echvi_2472 0.26 -0.5 2,933,368 + Echvi_2472 0.26 -0.7 2,933,368 + Echvi_2472 0.26 -1.4 2,933,368 + Echvi_2472 0.26 -0.8 2,933,369 - Echvi_2472 0.26 -1.5 2,933,369 - Echvi_2472 0.26 -0.7 2,933,369 - Echvi_2472 0.26 -0.5 2,933,369 - Echvi_2472 0.26 -0.2 2,933,370 + Echvi_2472 0.26 -1.5 2,933,370 + Echvi_2472 0.26 -0.4 2,933,370 + Echvi_2472 0.26 -0.5 2,933,371 - Echvi_2472 0.26 -0.6 2,933,371 - Echvi_2472 0.26 -0.9 2,933,371 - Echvi_2472 0.26 -0.0 2,933,377 + Echvi_2472 0.26 -0.7 2,933,378 - Echvi_2472 0.26 +0.4 2,933,378 - Echvi_2472 0.26 -0.0 2,933,426 + Echvi_2472 0.28 +0.7 2,933,427 - Echvi_2472 0.28 +0.8 2,933,439 - Echvi_2472 0.28 -1.8
Or see this region's nucleotide sequence