Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1675

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1674 and Echvi_1675 are separated by 80 nucleotidesEchvi_1675 and Echvi_1676 are separated by 272 nucleotides Echvi_1674: Echvi_1674 - TonB-linked outer membrane protein, SusC/RagA family, at 1,955,378 to 1,958,392 _1674 Echvi_1675: Echvi_1675 - SusD family., at 1,958,473 to 1,959,969 _1675 Echvi_1676: Echvi_1676 - hypothetical protein, at 1,960,242 to 1,962,122 _1676 Position (kb) 1958 1959 1960Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1957.524 kb on + strand, within Echvi_1674at 1957.525 kb on - strand, within Echvi_1674at 1957.722 kb on - strand, within Echvi_1674at 1957.746 kb on - strand, within Echvi_1674at 1957.892 kb on + strand, within Echvi_1674at 1957.993 kb on - strand, within Echvi_1674at 1958.158 kb on + strandat 1958.160 kb on + strandat 1958.161 kb on - strandat 1958.268 kb on - strandat 1958.268 kb on - strandat 1958.376 kb on + strandat 1958.377 kb on - strandat 1958.377 kb on - strandat 1958.377 kb on - strandat 1958.433 kb on + strandat 1958.433 kb on + strandat 1958.434 kb on - strandat 1958.434 kb on - strandat 1958.434 kb on - strandat 1958.441 kb on - strandat 1958.452 kb on + strandat 1958.489 kb on + strandat 1958.489 kb on + strandat 1958.490 kb on - strandat 1958.490 kb on - strandat 1958.493 kb on - strandat 1958.493 kb on - strandat 1958.496 kb on + strandat 1958.647 kb on + strand, within Echvi_1675at 1958.648 kb on - strand, within Echvi_1675at 1958.648 kb on - strand, within Echvi_1675at 1958.648 kb on - strand, within Echvi_1675at 1958.788 kb on + strand, within Echvi_1675at 1958.789 kb on - strand, within Echvi_1675at 1958.789 kb on - strand, within Echvi_1675at 1958.843 kb on + strand, within Echvi_1675at 1958.843 kb on + strand, within Echvi_1675at 1958.859 kb on + strand, within Echvi_1675at 1959.401 kb on - strand, within Echvi_1675at 1959.401 kb on - strand, within Echvi_1675at 1959.407 kb on + strand, within Echvi_1675at 1959.408 kb on - strand, within Echvi_1675at 1959.434 kb on - strand, within Echvi_1675at 1959.434 kb on - strand, within Echvi_1675at 1959.434 kb on - strand, within Echvi_1675at 1959.436 kb on + strand, within Echvi_1675at 1959.437 kb on - strand, within Echvi_1675at 1959.437 kb on - strand, within Echvi_1675at 1959.437 kb on - strand, within Echvi_1675at 1959.437 kb on - strand, within Echvi_1675at 1959.437 kb on - strand, within Echvi_1675at 1959.467 kb on - strand, within Echvi_1675at 1959.549 kb on + strand, within Echvi_1675at 1959.726 kb on - strand, within Echvi_1675at 1959.747 kb on + strand, within Echvi_1675at 1959.747 kb on + strand, within Echvi_1675at 1959.837 kb on + strandat 1959.838 kb on - strandat 1959.838 kb on - strandat 1959.838 kb on - strandat 1960.025 kb on + strandat 1960.032 kb on + strandat 1960.039 kb on + strandat 1960.039 kb on + strandat 1960.106 kb on + strandat 1960.123 kb on - strandat 1960.173 kb on - strandat 1960.229 kb on - strandat 1960.235 kb on + strandat 1960.248 kb on - strandat 1960.248 kb on - strandat 1960.248 kb on - strandat 1960.256 kb on + strandat 1960.257 kb on - strandat 1960.259 kb on - strandat 1960.264 kb on + strandat 1960.265 kb on - strandat 1960.452 kb on - strand, within Echvi_1676at 1960.454 kb on + strand, within Echvi_1676at 1960.454 kb on + strand, within Echvi_1676at 1960.455 kb on - strand, within Echvi_1676at 1960.455 kb on - strand, within Echvi_1676at 1960.458 kb on - strand, within Echvi_1676at 1960.535 kb on + strand, within Echvi_1676at 1960.678 kb on + strand, within Echvi_1676at 1960.678 kb on + strand, within Echvi_1676at 1960.749 kb on + strand, within Echvi_1676at 1960.955 kb on - strand, within Echvi_1676at 1960.955 kb on - strand, within Echvi_1676

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
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1,957,524 + Echvi_1674 0.71 +0.4
1,957,525 - Echvi_1674 0.71 +0.2
1,957,722 - Echvi_1674 0.78 -0.4
1,957,746 - Echvi_1674 0.79 +0.9
1,957,892 + Echvi_1674 0.83 -2.0
1,957,993 - Echvi_1674 0.87 +2.9
1,958,158 + -0.5
1,958,160 + -0.9
1,958,161 - +0.5
1,958,268 - -0.6
1,958,268 - +0.3
1,958,376 + -0.3
1,958,377 - +0.2
1,958,377 - -0.0
1,958,377 - +1.5
1,958,433 + -0.9
1,958,433 + +0.9
1,958,434 - -0.4
1,958,434 - -0.7
1,958,434 - -0.1
1,958,441 - +0.5
1,958,452 + +0.4
1,958,489 + +1.2
1,958,489 + +0.3
1,958,490 - +0.2
1,958,490 - -0.5
1,958,493 - -0.4
1,958,493 - +0.4
1,958,496 + +0.2
1,958,647 + Echvi_1675 0.12 +1.6
1,958,648 - Echvi_1675 0.12 -1.9
1,958,648 - Echvi_1675 0.12 +0.4
1,958,648 - Echvi_1675 0.12 +0.7
1,958,788 + Echvi_1675 0.21 -0.1
1,958,789 - Echvi_1675 0.21 +0.0
1,958,789 - Echvi_1675 0.21 +0.3
1,958,843 + Echvi_1675 0.25 -0.6
1,958,843 + Echvi_1675 0.25 -1.0
1,958,859 + Echvi_1675 0.26 +0.1
1,959,401 - Echvi_1675 0.62 -0.1
1,959,401 - Echvi_1675 0.62 +1.2
1,959,407 + Echvi_1675 0.62 +0.0
1,959,408 - Echvi_1675 0.62 +1.3
1,959,434 - Echvi_1675 0.64 -0.7
1,959,434 - Echvi_1675 0.64 -0.5
1,959,434 - Echvi_1675 0.64 +0.1
1,959,436 + Echvi_1675 0.64 +0.7
1,959,437 - Echvi_1675 0.64 +1.4
1,959,437 - Echvi_1675 0.64 +1.3
1,959,437 - Echvi_1675 0.64 +0.6
1,959,437 - Echvi_1675 0.64 -0.0
1,959,437 - Echvi_1675 0.64 -0.1
1,959,467 - Echvi_1675 0.66 -1.7
1,959,549 + Echvi_1675 0.72 +1.9
1,959,726 - Echvi_1675 0.84 +0.9
1,959,747 + Echvi_1675 0.85 +0.9
1,959,747 + Echvi_1675 0.85 +0.7
1,959,837 + +0.3
1,959,838 - -0.7
1,959,838 - +0.1
1,959,838 - -0.7
1,960,025 + +0.0
1,960,032 + -2.3
1,960,039 + -2.3
1,960,039 + -1.0
1,960,106 + +0.3
1,960,123 - +0.0
1,960,173 - -0.1
1,960,229 - +1.1
1,960,235 + +1.9
1,960,248 - -0.4
1,960,248 - -0.1
1,960,248 - +1.5
1,960,256 + -0.1
1,960,257 - -0.3
1,960,259 - +0.2
1,960,264 + +0.5
1,960,265 - +0.8
1,960,452 - Echvi_1676 0.11 +0.2
1,960,454 + Echvi_1676 0.11 -0.9
1,960,454 + Echvi_1676 0.11 -1.2
1,960,455 - Echvi_1676 0.11 -1.0
1,960,455 - Echvi_1676 0.11 +0.9
1,960,458 - Echvi_1676 0.11 -0.1
1,960,535 + Echvi_1676 0.16 -0.0
1,960,678 + Echvi_1676 0.23 -0.1
1,960,678 + Echvi_1676 0.23 +2.2
1,960,749 + Echvi_1676 0.27 +0.9
1,960,955 - Echvi_1676 0.38 -1.1
1,960,955 - Echvi_1676 0.38 -0.4

Or see this region's nucleotide sequence