Experiment: m.b. Dimethyl Sulfoxide 12 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0836 and Echvi_0837 are separated by 530 nucleotides Echvi_0837 and Echvi_0838 are separated by 188 nucleotides
Echvi_0836: Echvi_0836 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 951,477 to 953,936
_0836
Echvi_0837: Echvi_0837 - RNA polymerase sigma factor, sigma-70 family, at 954,467 to 955,129
_0837
Echvi_0838: Echvi_0838 - Outer membrane receptor for ferrienterochelin and colicins, at 955,318 to 958,470
_0838
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 953.469 kb on + strand, within Echvi_0836 at 953.474 kb on + strand, within Echvi_0836 at 953.475 kb on - strand, within Echvi_0836 at 953.476 kb on + strand, within Echvi_0836 at 953.476 kb on + strand, within Echvi_0836 at 953.477 kb on - strand, within Echvi_0836 at 953.477 kb on - strand, within Echvi_0836 at 953.512 kb on + strand, within Echvi_0836 at 953.512 kb on + strand, within Echvi_0836 at 953.577 kb on - strand, within Echvi_0836 at 953.584 kb on + strand, within Echvi_0836 at 953.585 kb on - strand, within Echvi_0836 at 953.585 kb on - strand, within Echvi_0836 at 953.707 kb on + strand at 953.707 kb on + strand at 953.707 kb on + strand at 953.708 kb on - strand at 953.708 kb on - strand at 953.711 kb on + strand at 953.712 kb on - strand at 953.712 kb on - strand at 953.732 kb on + strand at 953.732 kb on + strand at 953.748 kb on + strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.760 kb on + strand at 953.764 kb on + strand at 953.795 kb on + strand at 953.824 kb on + strand at 953.825 kb on - strand at 953.888 kb on + strand at 953.888 kb on + strand at 953.888 kb on + strand at 953.888 kb on + strand at 953.889 kb on - strand at 953.889 kb on - strand at 953.889 kb on - strand at 953.889 kb on - strand at 953.889 kb on - strand at 953.898 kb on + strand at 953.922 kb on + strand at 953.997 kb on + strand at 953.997 kb on + strand at 954.013 kb on - strand at 954.087 kb on + strand at 954.092 kb on - strand at 954.105 kb on - strand at 954.146 kb on - strand at 954.260 kb on - strand at 954.295 kb on - strand at 954.295 kb on - strand at 954.295 kb on - strand at 954.295 kb on - strand at 954.296 kb on - strand at 954.355 kb on - strand at 954.419 kb on + strand at 954.419 kb on + strand at 954.440 kb on + strand at 954.466 kb on - strand at 954.466 kb on - strand at 954.466 kb on - strand at 954.466 kb on - strand at 954.584 kb on + strand, within Echvi_0837 at 954.585 kb on - strand, within Echvi_0837 at 954.627 kb on + strand, within Echvi_0837 at 954.712 kb on + strand, within Echvi_0837 at 954.735 kb on - strand, within Echvi_0837 at 954.841 kb on - strand, within Echvi_0837 at 954.850 kb on + strand, within Echvi_0837 at 954.984 kb on + strand, within Echvi_0837 at 954.995 kb on - strand, within Echvi_0837 at 955.019 kb on - strand, within Echvi_0837 at 955.104 kb on - strand at 955.158 kb on - strand at 955.171 kb on + strand at 955.171 kb on + strand at 955.171 kb on + strand at 955.172 kb on - strand at 955.172 kb on - strand at 955.172 kb on - strand at 955.179 kb on + strand at 955.202 kb on - strand at 955.213 kb on + strand at 955.214 kb on - strand at 955.214 kb on - strand at 955.271 kb on + strand at 955.272 kb on - strand at 955.330 kb on - strand at 955.331 kb on + strand at 955.331 kb on + strand at 955.331 kb on + strand at 955.331 kb on + strand at 955.415 kb on + strand at 955.415 kb on + strand at 955.415 kb on + strand at 955.416 kb on - strand at 955.416 kb on - strand at 955.421 kb on + strand at 955.421 kb on + strand at 955.421 kb on + strand at 955.422 kb on - strand at 955.422 kb on - strand at 955.426 kb on - strand at 955.480 kb on - strand at 955.480 kb on - strand at 955.491 kb on + strand at 955.491 kb on + strand at 955.491 kb on + strand at 955.491 kb on + strand at 955.492 kb on - strand at 955.492 kb on - strand at 955.492 kb on - strand at 955.493 kb on + strand at 955.493 kb on + strand at 955.534 kb on - strand at 955.582 kb on - strand at 955.602 kb on + strand at 955.603 kb on - strand at 955.654 kb on + strand, within Echvi_0838 at 955.654 kb on + strand, within Echvi_0838 at 955.655 kb on - strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.658 kb on + strand, within Echvi_0838 at 955.659 kb on - strand, within Echvi_0838 at 955.659 kb on - strand, within Echvi_0838 at 955.659 kb on - strand, within Echvi_0838 at 955.671 kb on + strand, within Echvi_0838 at 955.682 kb on + strand, within Echvi_0838 at 955.781 kb on + strand, within Echvi_0838 at 955.781 kb on + strand, within Echvi_0838 at 955.782 kb on - strand, within Echvi_0838 at 955.782 kb on - strand, within Echvi_0838 at 955.782 kb on - strand, within Echvi_0838 at 955.786 kb on + strand, within Echvi_0838 at 955.787 kb on - strand, within Echvi_0838 at 955.803 kb on + strand, within Echvi_0838 at 955.804 kb on - strand, within Echvi_0838 at 955.804 kb on - strand, within Echvi_0838 at 955.828 kb on - strand, within Echvi_0838 at 955.829 kb on + strand, within Echvi_0838 at 955.829 kb on + strand, within Echvi_0838 at 955.830 kb on - strand, within Echvi_0838 at 955.830 kb on - strand, within Echvi_0838 at 955.830 kb on - strand, within Echvi_0838 at 955.830 kb on - strand, within Echvi_0838 at 955.836 kb on - strand, within Echvi_0838 at 955.836 kb on - strand, within Echvi_0838 at 955.863 kb on + strand, within Echvi_0838 at 955.866 kb on - strand, within Echvi_0838 at 955.866 kb on - strand, within Echvi_0838 at 955.881 kb on + strand, within Echvi_0838 at 955.912 kb on - strand, within Echvi_0838 at 955.914 kb on - strand, within Echvi_0838 at 955.945 kb on - strand, within Echvi_0838 at 955.947 kb on + strand, within Echvi_0838 at 955.947 kb on + strand, within Echvi_0838 at 955.948 kb on - strand, within Echvi_0838 at 955.950 kb on + strand, within Echvi_0838 at 955.950 kb on + strand, within Echvi_0838 at 955.974 kb on + strand, within Echvi_0838 at 955.975 kb on - strand, within Echvi_0838 at 956.060 kb on + strand, within Echvi_0838 at 956.060 kb on + strand, within Echvi_0838 at 956.061 kb on - strand, within Echvi_0838 at 956.065 kb on - strand, within Echvi_0838 at 956.066 kb on + strand, within Echvi_0838 at 956.067 kb on - strand, within Echvi_0838 at 956.126 kb on + strand, within Echvi_0838
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol% remove 953,469 + Echvi_0836 0.81 +0.3 953,474 + Echvi_0836 0.81 +0.5 953,475 - Echvi_0836 0.81 +0.4 953,476 + Echvi_0836 0.81 +0.9 953,476 + Echvi_0836 0.81 +0.6 953,477 - Echvi_0836 0.81 -0.5 953,477 - Echvi_0836 0.81 -0.7 953,512 + Echvi_0836 0.83 +0.6 953,512 + Echvi_0836 0.83 -0.0 953,577 - Echvi_0836 0.85 -2.2 953,584 + Echvi_0836 0.86 -0.4 953,585 - Echvi_0836 0.86 +0.5 953,585 - Echvi_0836 0.86 -0.0 953,707 + -0.4 953,707 + +0.4 953,707 + -0.8 953,708 - +0.1 953,708 - +0.1 953,711 + +1.3 953,712 - +1.1 953,712 - +0.4 953,732 + -0.5 953,732 + +0.5 953,748 + +0.3 953,749 - +2.2 953,749 - +0.2 953,749 - +2.8 953,760 + +0.6 953,764 + +0.3 953,795 + +0.9 953,824 + +0.3 953,825 - +1.6 953,888 + -0.7 953,888 + -0.9 953,888 + -0.4 953,888 + -0.3 953,889 - +1.2 953,889 - -0.8 953,889 - -0.8 953,889 - -0.5 953,889 - +0.7 953,898 + +0.6 953,922 + -0.1 953,997 + -1.5 953,997 + +0.1 954,013 - +2.0 954,087 + +0.1 954,092 - +0.2 954,105 - -0.3 954,146 - -0.9 954,260 - -0.1 954,295 - +0.4 954,295 - -0.6 954,295 - -0.1 954,295 - -1.7 954,296 - +0.2 954,355 - +0.4 954,419 + +0.7 954,419 + -0.2 954,440 + -0.4 954,466 - -0.9 954,466 - +0.3 954,466 - +0.6 954,466 - +0.9 954,584 + Echvi_0837 0.18 -2.2 954,585 - Echvi_0837 0.18 -0.5 954,627 + Echvi_0837 0.24 -0.3 954,712 + Echvi_0837 0.37 -0.7 954,735 - Echvi_0837 0.40 -0.8 954,841 - Echvi_0837 0.56 -0.9 954,850 + Echvi_0837 0.58 -2.2 954,984 + Echvi_0837 0.78 -0.9 954,995 - Echvi_0837 0.80 -1.0 955,019 - Echvi_0837 0.83 -0.3 955,104 - +0.4 955,158 - +0.9 955,171 + -1.2 955,171 + -0.0 955,171 + +0.0 955,172 - -0.5 955,172 - +0.2 955,172 - +2.0 955,179 + -1.8 955,202 - +0.4 955,213 + +0.5 955,214 - -0.2 955,214 - +1.0 955,271 + +0.6 955,272 - -1.7 955,330 - -0.4 955,331 + +0.8 955,331 + +0.5 955,331 + -1.9 955,331 + +0.1 955,415 + +0.4 955,415 + -0.3 955,415 + -1.1 955,416 - +0.4 955,416 - -1.1 955,421 + -1.4 955,421 + -0.1 955,421 + -1.5 955,422 - -1.4 955,422 - -2.2 955,426 - -0.4 955,480 - +0.1 955,480 - -0.6 955,491 + -0.6 955,491 + +0.2 955,491 + -0.0 955,491 + +0.1 955,492 - -0.3 955,492 - -2.2 955,492 - +0.6 955,493 + -0.2 955,493 + -0.6 955,534 - -0.8 955,582 - -0.9 955,602 + +1.6 955,603 - -0.0 955,654 + Echvi_0838 0.11 +1.0 955,654 + Echvi_0838 0.11 -2.1 955,655 - Echvi_0838 0.11 -1.2 955,658 + Echvi_0838 0.11 +1.0 955,658 + Echvi_0838 0.11 -0.3 955,658 + Echvi_0838 0.11 -1.4 955,658 + Echvi_0838 0.11 -0.0 955,658 + Echvi_0838 0.11 +1.0 955,658 + Echvi_0838 0.11 -0.9 955,658 + Echvi_0838 0.11 -0.5 955,658 + Echvi_0838 0.11 -1.2 955,659 - Echvi_0838 0.11 -0.2 955,659 - Echvi_0838 0.11 +0.2 955,659 - Echvi_0838 0.11 -0.5 955,671 + Echvi_0838 0.11 +0.4 955,682 + Echvi_0838 0.12 -0.8 955,781 + Echvi_0838 0.15 +0.6 955,781 + Echvi_0838 0.15 +0.1 955,782 - Echvi_0838 0.15 -0.6 955,782 - Echvi_0838 0.15 +0.8 955,782 - Echvi_0838 0.15 +0.0 955,786 + Echvi_0838 0.15 -1.0 955,787 - Echvi_0838 0.15 +2.0 955,803 + Echvi_0838 0.15 +0.4 955,804 - Echvi_0838 0.15 +0.4 955,804 - Echvi_0838 0.15 +1.2 955,828 - Echvi_0838 0.16 -0.0 955,829 + Echvi_0838 0.16 +0.6 955,829 + Echvi_0838 0.16 +2.4 955,830 - Echvi_0838 0.16 -0.4 955,830 - Echvi_0838 0.16 -0.2 955,830 - Echvi_0838 0.16 -0.2 955,830 - Echvi_0838 0.16 -0.4 955,836 - Echvi_0838 0.16 +0.1 955,836 - Echvi_0838 0.16 +0.3 955,863 + Echvi_0838 0.17 +0.5 955,866 - Echvi_0838 0.17 -0.4 955,866 - Echvi_0838 0.17 -0.2 955,881 + Echvi_0838 0.18 -1.5 955,912 - Echvi_0838 0.19 -1.7 955,914 - Echvi_0838 0.19 -0.2 955,945 - Echvi_0838 0.20 -0.0 955,947 + Echvi_0838 0.20 -0.1 955,947 + Echvi_0838 0.20 -0.4 955,948 - Echvi_0838 0.20 -0.4 955,950 + Echvi_0838 0.20 +2.6 955,950 + Echvi_0838 0.20 -0.6 955,974 + Echvi_0838 0.21 +0.5 955,975 - Echvi_0838 0.21 -0.2 956,060 + Echvi_0838 0.24 -0.7 956,060 + Echvi_0838 0.24 +0.1 956,061 - Echvi_0838 0.24 +0.5 956,065 - Echvi_0838 0.24 -0.9 956,066 + Echvi_0838 0.24 -2.6 956,067 - Echvi_0838 0.24 -0.7 956,126 + Echvi_0838 0.26 +0.1
Or see this region's nucleotide sequence