Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0676

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0675 and Echvi_0676 are separated by 165 nucleotidesEchvi_0676 and Echvi_0677 overlap by 4 nucleotides Echvi_0675: Echvi_0675 - Aspartate/tyrosine/aromatic aminotransferase, at 757,070 to 758,272 _0675 Echvi_0676: Echvi_0676 - Predicted glycosyltransferases, at 758,438 to 759,148 _0676 Echvi_0677: Echvi_0677 - Glycosyltransferases involved in cell wall biogenesis, at 759,145 to 759,939 _0677 Position (kb) 758 759 760Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 758.266 kb on + strandat 758.266 kb on + strandat 758.267 kb on - strandat 758.267 kb on - strandat 758.267 kb on - strandat 758.267 kb on - strandat 758.299 kb on + strandat 758.304 kb on - strandat 758.376 kb on + strandat 758.454 kb on + strandat 758.455 kb on - strandat 758.455 kb on - strandat 758.458 kb on + strandat 758.459 kb on - strandat 758.459 kb on - strandat 758.459 kb on - strandat 758.518 kb on + strand, within Echvi_0676at 758.607 kb on - strand, within Echvi_0676at 758.719 kb on - strand, within Echvi_0676at 758.730 kb on + strand, within Echvi_0676at 758.730 kb on + strand, within Echvi_0676at 758.800 kb on - strand, within Echvi_0676at 758.800 kb on - strand, within Echvi_0676at 758.814 kb on + strand, within Echvi_0676at 758.819 kb on + strand, within Echvi_0676at 758.819 kb on + strand, within Echvi_0676at 758.848 kb on + strand, within Echvi_0676at 758.939 kb on + strand, within Echvi_0676at 758.939 kb on + strand, within Echvi_0676at 758.947 kb on + strand, within Echvi_0676at 758.947 kb on + strand, within Echvi_0676at 758.947 kb on + strand, within Echvi_0676at 758.948 kb on - strand, within Echvi_0676at 758.975 kb on + strand, within Echvi_0676at 758.986 kb on + strand, within Echvi_0676at 758.986 kb on + strand, within Echvi_0676at 759.090 kb on - strandat 759.107 kb on + strandat 759.110 kb on + strandat 759.151 kb on + strandat 759.151 kb on + strandat 759.152 kb on - strandat 759.166 kb on + strandat 759.166 kb on + strandat 759.178 kb on - strandat 759.178 kb on - strandat 759.179 kb on + strandat 759.180 kb on - strandat 759.208 kb on + strandat 759.259 kb on - strand, within Echvi_0677at 759.332 kb on + strand, within Echvi_0677at 759.333 kb on - strand, within Echvi_0677at 759.333 kb on - strand, within Echvi_0677at 759.333 kb on - strand, within Echvi_0677at 759.434 kb on + strand, within Echvi_0677at 759.435 kb on - strand, within Echvi_0677at 759.438 kb on + strand, within Echvi_0677at 759.438 kb on + strand, within Echvi_0677at 759.439 kb on - strand, within Echvi_0677at 759.439 kb on - strand, within Echvi_0677at 759.490 kb on - strand, within Echvi_0677at 759.526 kb on + strand, within Echvi_0677at 759.527 kb on - strand, within Echvi_0677at 759.527 kb on - strand, within Echvi_0677at 759.570 kb on + strand, within Echvi_0677at 759.570 kb on + strand, within Echvi_0677at 759.571 kb on - strand, within Echvi_0677at 759.575 kb on + strand, within Echvi_0677at 759.575 kb on + strand, within Echvi_0677at 759.608 kb on - strand, within Echvi_0677at 759.608 kb on - strand, within Echvi_0677at 759.614 kb on - strand, within Echvi_0677at 759.629 kb on + strand, within Echvi_0677at 759.630 kb on - strand, within Echvi_0677at 759.630 kb on - strand, within Echvi_0677at 759.658 kb on + strand, within Echvi_0677at 759.672 kb on + strand, within Echvi_0677at 759.673 kb on - strand, within Echvi_0677at 759.673 kb on - strand, within Echvi_0677at 759.745 kb on - strand, within Echvi_0677at 759.745 kb on - strand, within Echvi_0677at 759.798 kb on + strand, within Echvi_0677at 759.798 kb on + strand, within Echvi_0677at 759.799 kb on - strand, within Echvi_0677at 759.799 kb on - strand, within Echvi_0677at 759.821 kb on - strand, within Echvi_0677at 759.827 kb on - strand, within Echvi_0677at 759.837 kb on - strand, within Echvi_0677at 759.837 kb on - strand, within Echvi_0677at 759.876 kb on - strandat 759.876 kb on - strandat 759.890 kb on + strandat 759.890 kb on + strandat 759.891 kb on - strandat 759.910 kb on + strandat 759.978 kb on + strandat 760.005 kb on - strandat 760.009 kb on + strandat 760.018 kb on + strandat 760.019 kb on - strandat 760.025 kb on - strandat 760.025 kb on - strandat 760.028 kb on + strandat 760.028 kb on + strandat 760.028 kb on + strandat 760.029 kb on - strandat 760.031 kb on + strandat 760.032 kb on - strandat 760.071 kb on + strandat 760.129 kb on + strandat 760.137 kb on + strandat 760.138 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
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758,266 + +1.5
758,266 + -0.5
758,267 - +0.4
758,267 - +1.1
758,267 - +2.9
758,267 - +0.4
758,299 + +1.1
758,304 - -1.7
758,376 + +1.5
758,454 + -3.5
758,455 - -2.7
758,455 - -2.8
758,458 + -2.7
758,459 - -4.1
758,459 - -1.7
758,459 - -1.7
758,518 + Echvi_0676 0.11 -3.3
758,607 - Echvi_0676 0.24 -1.6
758,719 - Echvi_0676 0.40 -2.0
758,730 + Echvi_0676 0.41 -2.1
758,730 + Echvi_0676 0.41 -1.3
758,800 - Echvi_0676 0.51 -2.9
758,800 - Echvi_0676 0.51 -4.0
758,814 + Echvi_0676 0.53 -0.4
758,819 + Echvi_0676 0.54 -2.7
758,819 + Echvi_0676 0.54 -3.6
758,848 + Echvi_0676 0.58 -1.2
758,939 + Echvi_0676 0.70 -3.1
758,939 + Echvi_0676 0.70 -3.6
758,947 + Echvi_0676 0.72 -3.7
758,947 + Echvi_0676 0.72 -3.7
758,947 + Echvi_0676 0.72 -3.6
758,948 - Echvi_0676 0.72 -4.4
758,975 + Echvi_0676 0.76 -2.7
758,986 + Echvi_0676 0.77 -2.5
758,986 + Echvi_0676 0.77 -0.4
759,090 - -3.1
759,107 + -3.3
759,110 + -2.3
759,151 + -0.7
759,151 + -2.2
759,152 - +0.3
759,166 + -0.6
759,166 + -1.2
759,178 - -0.3
759,178 - -1.5
759,179 + -1.4
759,180 - -0.1
759,208 + -0.3
759,259 - Echvi_0677 0.14 +0.3
759,332 + Echvi_0677 0.24 -0.4
759,333 - Echvi_0677 0.24 -1.6
759,333 - Echvi_0677 0.24 -0.6
759,333 - Echvi_0677 0.24 -0.4
759,434 + Echvi_0677 0.36 +0.9
759,435 - Echvi_0677 0.36 +0.6
759,438 + Echvi_0677 0.37 -0.1
759,438 + Echvi_0677 0.37 +3.2
759,439 - Echvi_0677 0.37 +1.6
759,439 - Echvi_0677 0.37 +0.0
759,490 - Echvi_0677 0.43 +0.6
759,526 + Echvi_0677 0.48 -1.3
759,527 - Echvi_0677 0.48 +0.0
759,527 - Echvi_0677 0.48 +0.8
759,570 + Echvi_0677 0.53 +0.5
759,570 + Echvi_0677 0.53 +0.8
759,571 - Echvi_0677 0.54 -0.3
759,575 + Echvi_0677 0.54 +0.9
759,575 + Echvi_0677 0.54 -0.2
759,608 - Echvi_0677 0.58 -0.3
759,608 - Echvi_0677 0.58 -0.3
759,614 - Echvi_0677 0.59 +0.0
759,629 + Echvi_0677 0.61 +0.9
759,630 - Echvi_0677 0.61 -1.8
759,630 - Echvi_0677 0.61 -0.2
759,658 + Echvi_0677 0.65 +0.2
759,672 + Echvi_0677 0.66 -0.9
759,673 - Echvi_0677 0.66 -1.1
759,673 - Echvi_0677 0.66 -2.4
759,745 - Echvi_0677 0.75 +0.3
759,745 - Echvi_0677 0.75 -1.5
759,798 + Echvi_0677 0.82 -0.2
759,798 + Echvi_0677 0.82 +2.9
759,799 - Echvi_0677 0.82 -0.4
759,799 - Echvi_0677 0.82 -0.5
759,821 - Echvi_0677 0.85 +0.4
759,827 - Echvi_0677 0.86 +0.0
759,837 - Echvi_0677 0.87 -1.1
759,837 - Echvi_0677 0.87 -0.2
759,876 - +0.3
759,876 - -0.3
759,890 + +0.9
759,890 + -2.3
759,891 - -1.8
759,910 + -0.9
759,978 + +1.7
760,005 - -0.6
760,009 + +0.3
760,018 + -0.4
760,019 - +0.3
760,025 - -0.1
760,025 - +0.2
760,028 + +1.5
760,028 + -2.1
760,028 + +0.4
760,029 - -0.8
760,031 + -0.0
760,032 - -0.2
760,071 + -0.2
760,129 + +0.4
760,137 + +1.9
760,138 - -0.4

Or see this region's nucleotide sequence