Strain Fitness in Agrobacterium fabrum C58 around Atu3899

Experiment: D-Saccharic potassium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3898 and Atu3899 are separated by 141 nucleotidesAtu3899 and Atu3900 are separated by 10 nucleotides Atu3898: Atu3898 - DeoR family transcriptional regulator, at 993,899 to 994,672 Atu3898 Atu3899: Atu3899 - siroheme synthase, at 994,814 to 996,241 Atu3899 Atu3900: Atu3900 - nitrate reductase large subunit, at 996,252 to 998,900 Atu3900 Position (kb) 994 995 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 993.943 kb on + strandat 994.000 kb on - strand, within Atu3898at 994.000 kb on - strand, within Atu3898at 994.101 kb on + strand, within Atu3898at 994.124 kb on + strand, within Atu3898at 994.134 kb on + strand, within Atu3898at 994.134 kb on + strand, within Atu3898at 994.134 kb on + strand, within Atu3898at 994.228 kb on + strand, within Atu3898at 994.290 kb on - strand, within Atu3898at 994.290 kb on - strand, within Atu3898at 994.348 kb on - strand, within Atu3898at 994.531 kb on + strand, within Atu3898at 994.550 kb on + strand, within Atu3898at 994.570 kb on + strand, within Atu3898at 994.612 kb on + strandat 994.732 kb on + strandat 994.739 kb on - strandat 994.754 kb on + strandat 994.844 kb on + strandat 994.849 kb on + strandat 994.852 kb on - strandat 994.852 kb on - strandat 994.964 kb on + strand, within Atu3899at 995.027 kb on - strand, within Atu3899at 995.043 kb on + strand, within Atu3899at 995.043 kb on + strand, within Atu3899at 995.081 kb on - strand, within Atu3899at 995.107 kb on - strand, within Atu3899at 995.165 kb on - strand, within Atu3899at 995.191 kb on + strand, within Atu3899at 995.205 kb on - strand, within Atu3899at 995.237 kb on + strand, within Atu3899at 995.341 kb on + strand, within Atu3899at 995.349 kb on - strand, within Atu3899at 995.407 kb on - strand, within Atu3899at 995.472 kb on - strand, within Atu3899at 995.489 kb on + strand, within Atu3899at 995.509 kb on + strand, within Atu3899at 995.548 kb on + strand, within Atu3899at 995.557 kb on - strand, within Atu3899at 995.567 kb on - strand, within Atu3899at 995.650 kb on - strand, within Atu3899at 995.725 kb on + strand, within Atu3899at 995.768 kb on - strand, within Atu3899at 995.780 kb on + strand, within Atu3899at 995.846 kb on + strand, within Atu3899at 995.846 kb on + strand, within Atu3899at 995.942 kb on - strand, within Atu3899at 995.942 kb on - strand, within Atu3899at 995.942 kb on - strand, within Atu3899at 995.980 kb on - strand, within Atu3899at 995.980 kb on - strand, within Atu3899at 996.001 kb on + strand, within Atu3899at 996.045 kb on - strand, within Atu3899at 996.143 kb on - strandat 996.160 kb on - strandat 996.160 kb on - strandat 996.235 kb on + strandat 996.273 kb on - strandat 996.350 kb on + strandat 996.533 kb on - strand, within Atu3900at 996.575 kb on + strand, within Atu3900at 996.687 kb on + strand, within Atu3900at 996.695 kb on - strand, within Atu3900at 996.821 kb on + strand, within Atu3900at 996.879 kb on - strand, within Atu3900at 996.952 kb on - strand, within Atu3900at 996.967 kb on + strand, within Atu3900at 996.967 kb on + strand, within Atu3900at 996.970 kb on - strand, within Atu3900at 996.975 kb on - strand, within Atu3900at 996.992 kb on - strand, within Atu3900at 996.992 kb on - strand, within Atu3900at 997.121 kb on + strand, within Atu3900at 997.129 kb on - strand, within Atu3900at 997.170 kb on + strand, within Atu3900

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C)
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993,943 + +0.4
994,000 - Atu3898 0.13 -1.3
994,000 - Atu3898 0.13 -2.9
994,101 + Atu3898 0.26 -0.6
994,124 + Atu3898 0.29 +1.3
994,134 + Atu3898 0.30 -1.5
994,134 + Atu3898 0.30 +0.4
994,134 + Atu3898 0.30 +0.3
994,228 + Atu3898 0.43 +0.1
994,290 - Atu3898 0.51 -2.7
994,290 - Atu3898 0.51 -2.1
994,348 - Atu3898 0.58 -3.4
994,531 + Atu3898 0.82 +1.6
994,550 + Atu3898 0.84 +0.1
994,570 + Atu3898 0.87 +0.4
994,612 + +0.1
994,732 + +0.2
994,739 - -0.3
994,754 + +1.9
994,844 + -0.6
994,849 + +2.5
994,852 - -1.4
994,852 - +1.7
994,964 + Atu3899 0.11 +1.2
995,027 - Atu3899 0.15 +2.3
995,043 + Atu3899 0.16 -0.4
995,043 + Atu3899 0.16 +1.0
995,081 - Atu3899 0.19 -0.4
995,107 - Atu3899 0.21 +0.1
995,165 - Atu3899 0.25 -0.6
995,191 + Atu3899 0.26 +0.7
995,205 - Atu3899 0.27 +3.9
995,237 + Atu3899 0.30 +0.9
995,341 + Atu3899 0.37 -0.2
995,349 - Atu3899 0.37 +0.6
995,407 - Atu3899 0.42 +0.5
995,472 - Atu3899 0.46 -0.4
995,489 + Atu3899 0.47 -0.2
995,509 + Atu3899 0.49 -0.6
995,548 + Atu3899 0.51 +0.7
995,557 - Atu3899 0.52 -0.3
995,567 - Atu3899 0.53 -0.1
995,650 - Atu3899 0.59 -2.1
995,725 + Atu3899 0.64 -0.8
995,768 - Atu3899 0.67 -1.7
995,780 + Atu3899 0.68 -0.3
995,846 + Atu3899 0.72 +0.4
995,846 + Atu3899 0.72 +1.4
995,942 - Atu3899 0.79 -0.5
995,942 - Atu3899 0.79 +0.3
995,942 - Atu3899 0.79 +0.9
995,980 - Atu3899 0.82 -1.0
995,980 - Atu3899 0.82 -0.3
996,001 + Atu3899 0.83 -0.6
996,045 - Atu3899 0.86 +0.2
996,143 - -1.3
996,160 - +0.6
996,160 - -0.5
996,235 + +0.8
996,273 - +1.0
996,350 + +2.3
996,533 - Atu3900 0.11 -0.7
996,575 + Atu3900 0.12 -0.7
996,687 + Atu3900 0.16 -1.7
996,695 - Atu3900 0.17 -0.5
996,821 + Atu3900 0.21 +0.1
996,879 - Atu3900 0.24 -0.6
996,952 - Atu3900 0.26 -0.0
996,967 + Atu3900 0.27 +1.1
996,967 + Atu3900 0.27 -0.6
996,970 - Atu3900 0.27 -0.8
996,975 - Atu3900 0.27 +0.9
996,992 - Atu3900 0.28 -0.3
996,992 - Atu3900 0.28 +1.6
997,121 + Atu3900 0.33 -0.2
997,129 - Atu3900 0.33 +0.7
997,170 + Atu3900 0.35 +0.7

Or see this region's nucleotide sequence