Strain Fitness in Agrobacterium fabrum C58 around Atu0210

Experiment: D-Saccharic potassium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0209 and Atu0210 are separated by 364 nucleotidesAtu0210 and Atu0211 are separated by 18 nucleotidesAtu0211 and Atu0212 are separated by 95 nucleotides Atu0209: Atu0209 - hypothetical protein, at 213,782 to 214,888 Atu0209 Atu0210: Atu0210 - hypothetical protein, at 215,253 to 215,597 Atu0210 Atu0211: Atu0211 - hypothetical protein, at 215,616 to 216,467 Atu0211 Atu0212: Atu0212 - hypothetical protein, at 216,563 to 216,922 Atu0212 Position (kb) 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 214.296 kb on - strand, within Atu0209at 214.312 kb on - strand, within Atu0209at 214.388 kb on + strand, within Atu0209at 214.427 kb on + strand, within Atu0209at 214.435 kb on - strand, within Atu0209at 214.435 kb on - strand, within Atu0209at 214.492 kb on - strand, within Atu0209at 214.562 kb on + strand, within Atu0209at 214.586 kb on + strand, within Atu0209at 214.594 kb on - strand, within Atu0209at 214.666 kb on + strand, within Atu0209at 214.676 kb on - strand, within Atu0209at 214.700 kb on - strand, within Atu0209at 214.700 kb on - strand, within Atu0209at 214.718 kb on + strand, within Atu0209at 214.718 kb on + strand, within Atu0209at 214.726 kb on - strand, within Atu0209at 214.726 kb on - strand, within Atu0209at 214.750 kb on + strand, within Atu0209at 214.753 kb on - strand, within Atu0209at 214.760 kb on - strand, within Atu0209at 214.771 kb on + strand, within Atu0209at 214.779 kb on - strandat 214.796 kb on + strandat 214.804 kb on - strandat 214.883 kb on - strandat 215.076 kb on - strandat 215.088 kb on + strandat 215.088 kb on + strandat 215.096 kb on - strandat 215.096 kb on - strandat 215.130 kb on - strandat 215.147 kb on + strandat 215.154 kb on + strandat 215.155 kb on - strandat 215.155 kb on - strandat 215.155 kb on - strandat 215.162 kb on - strandat 215.186 kb on + strandat 215.190 kb on + strandat 215.214 kb on + strandat 215.236 kb on + strandat 215.249 kb on - strandat 215.287 kb on - strandat 215.289 kb on - strand, within Atu0210at 215.298 kb on + strand, within Atu0210at 215.310 kb on + strand, within Atu0210at 215.315 kb on + strand, within Atu0210at 215.333 kb on + strand, within Atu0210at 215.334 kb on + strand, within Atu0210at 215.342 kb on - strand, within Atu0210at 215.451 kb on + strand, within Atu0210at 215.458 kb on + strand, within Atu0210at 215.466 kb on - strand, within Atu0210at 215.620 kb on - strandat 215.640 kb on - strandat 215.650 kb on - strandat 215.652 kb on + strandat 215.655 kb on - strandat 215.677 kb on + strandat 215.685 kb on - strandat 215.685 kb on - strandat 215.720 kb on + strand, within Atu0211at 215.732 kb on + strand, within Atu0211at 215.769 kb on + strand, within Atu0211at 215.781 kb on + strand, within Atu0211at 215.786 kb on + strand, within Atu0211at 215.855 kb on - strand, within Atu0211at 215.918 kb on - strand, within Atu0211at 215.918 kb on - strand, within Atu0211at 215.936 kb on + strand, within Atu0211at 215.944 kb on - strand, within Atu0211at 215.989 kb on - strand, within Atu0211at 215.990 kb on - strand, within Atu0211at 216.039 kb on - strand, within Atu0211at 216.062 kb on + strand, within Atu0211at 216.157 kb on - strand, within Atu0211at 216.236 kb on - strand, within Atu0211at 216.497 kb on - strandat 216.515 kb on + strandat 216.533 kb on - strandat 216.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C)
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214,296 - Atu0209 0.46 +0.4
214,312 - Atu0209 0.48 -0.1
214,388 + Atu0209 0.55 +0.9
214,427 + Atu0209 0.58 -0.7
214,435 - Atu0209 0.59 +0.1
214,435 - Atu0209 0.59 +0.2
214,492 - Atu0209 0.64 +1.8
214,562 + Atu0209 0.70 -1.2
214,586 + Atu0209 0.73 -2.0
214,594 - Atu0209 0.73 +2.0
214,666 + Atu0209 0.80 +0.4
214,676 - Atu0209 0.81 +1.9
214,700 - Atu0209 0.83 -0.7
214,700 - Atu0209 0.83 -0.5
214,718 + Atu0209 0.85 -0.0
214,718 + Atu0209 0.85 +1.5
214,726 - Atu0209 0.85 +2.5
214,726 - Atu0209 0.85 -1.1
214,750 + Atu0209 0.87 +1.1
214,753 - Atu0209 0.88 +0.4
214,760 - Atu0209 0.88 -0.1
214,771 + Atu0209 0.89 -1.6
214,779 - +1.0
214,796 + -1.1
214,804 - +0.1
214,883 - -0.6
215,076 - +0.8
215,088 + +0.1
215,088 + -0.1
215,096 - -0.4
215,096 - +1.8
215,130 - -0.5
215,147 + -0.9
215,154 + +1.2
215,155 - -0.8
215,155 - -2.0
215,155 - +1.8
215,162 - +0.1
215,186 + -0.6
215,190 + +1.4
215,214 + +0.3
215,236 + +0.9
215,249 - +1.1
215,287 - +0.3
215,289 - Atu0210 0.10 +0.0
215,298 + Atu0210 0.13 +0.3
215,310 + Atu0210 0.17 +1.0
215,315 + Atu0210 0.18 -0.7
215,333 + Atu0210 0.23 +1.8
215,334 + Atu0210 0.23 +1.8
215,342 - Atu0210 0.26 -0.4
215,451 + Atu0210 0.57 +1.1
215,458 + Atu0210 0.59 +0.6
215,466 - Atu0210 0.62 +1.8
215,620 - -0.4
215,640 - -0.6
215,650 - -0.2
215,652 + +0.5
215,655 - -1.2
215,677 + -0.4
215,685 - -0.4
215,685 - +1.9
215,720 + Atu0211 0.12 +1.9
215,732 + Atu0211 0.14 +0.1
215,769 + Atu0211 0.18 +1.5
215,781 + Atu0211 0.19 -1.5
215,786 + Atu0211 0.20 -0.0
215,855 - Atu0211 0.28 -1.3
215,918 - Atu0211 0.35 -1.3
215,918 - Atu0211 0.35 +2.5
215,936 + Atu0211 0.38 -0.5
215,944 - Atu0211 0.38 -0.2
215,989 - Atu0211 0.44 +0.6
215,990 - Atu0211 0.44 -1.4
216,039 - Atu0211 0.50 +0.8
216,062 + Atu0211 0.52 -0.6
216,157 - Atu0211 0.63 -0.7
216,236 - Atu0211 0.73 -0.6
216,497 - -0.2
216,515 + +0.6
216,533 - -0.6
216,533 - -0.6

Or see this region's nucleotide sequence