Strain Fitness in Agrobacterium fabrum C58 around Atu0205

Experiment: D-Saccharic potassium salt (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0204 and Atu0205 are separated by 223 nucleotidesAtu0205 and Atu0206 are separated by 111 nucleotidesAtu0206 and Atu0207 overlap by 4 nucleotides Atu0204: Atu0204 - hypothetical protein, at 208,258 to 209,361 Atu0204 Atu0205: Atu0205 - methylmalonate-semialdehyde dehydrogenase, at 209,585 to 211,141 Atu0205 Atu0206: Atu0206 - hypothetical protein, at 211,253 to 211,570 Atu0206 Atu0207: Atu0207 - transcriptional regulator, LysR family, at 211,567 to 212,448 Atu0207 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2 3at 208.623 kb on + strand, within Atu0204at 208.660 kb on + strand, within Atu0204at 208.691 kb on + strand, within Atu0204at 208.742 kb on + strand, within Atu0204at 208.750 kb on - strand, within Atu0204at 208.766 kb on + strand, within Atu0204at 208.771 kb on + strand, within Atu0204at 208.779 kb on - strand, within Atu0204at 208.806 kb on - strand, within Atu0204at 208.834 kb on - strand, within Atu0204at 208.834 kb on - strand, within Atu0204at 208.834 kb on - strand, within Atu0204at 208.847 kb on + strand, within Atu0204at 208.855 kb on - strand, within Atu0204at 208.855 kb on - strand, within Atu0204at 208.892 kb on + strand, within Atu0204at 208.905 kb on + strand, within Atu0204at 208.984 kb on + strand, within Atu0204at 209.029 kb on - strand, within Atu0204at 209.062 kb on + strand, within Atu0204at 209.192 kb on - strand, within Atu0204at 209.216 kb on + strand, within Atu0204at 209.216 kb on + strand, within Atu0204at 209.216 kb on + strand, within Atu0204at 209.216 kb on + strand, within Atu0204at 209.271 kb on - strandat 209.342 kb on + strandat 209.350 kb on + strandat 209.429 kb on - strandat 209.637 kb on - strandat 209.718 kb on - strandat 209.719 kb on + strandat 209.719 kb on - strandat 209.839 kb on - strand, within Atu0205at 209.920 kb on - strand, within Atu0205at 210.053 kb on + strand, within Atu0205at 210.084 kb on - strand, within Atu0205at 210.097 kb on - strand, within Atu0205at 210.097 kb on - strand, within Atu0205at 210.126 kb on + strand, within Atu0205at 210.265 kb on - strand, within Atu0205at 210.265 kb on - strand, within Atu0205at 210.265 kb on - strand, within Atu0205at 210.292 kb on + strand, within Atu0205at 210.385 kb on - strand, within Atu0205at 210.405 kb on + strand, within Atu0205at 210.453 kb on - strand, within Atu0205at 210.480 kb on + strand, within Atu0205at 210.569 kb on - strand, within Atu0205at 210.587 kb on + strand, within Atu0205at 210.595 kb on - strand, within Atu0205at 210.632 kb on - strand, within Atu0205at 210.648 kb on - strand, within Atu0205at 210.713 kb on + strand, within Atu0205at 210.728 kb on - strand, within Atu0205at 210.768 kb on - strand, within Atu0205at 210.768 kb on - strand, within Atu0205at 210.791 kb on - strand, within Atu0205at 210.809 kb on - strand, within Atu0205at 210.837 kb on - strand, within Atu0205at 210.859 kb on - strand, within Atu0205at 210.859 kb on - strand, within Atu0205at 210.866 kb on - strand, within Atu0205at 211.082 kb on + strandat 211.189 kb on + strandat 211.306 kb on - strand, within Atu0206at 211.397 kb on + strand, within Atu0206at 211.397 kb on + strand, within Atu0206at 211.539 kb on - strandat 211.581 kb on + strandat 211.612 kb on + strandat 211.642 kb on + strandat 211.646 kb on - strandat 211.647 kb on + strandat 211.650 kb on - strandat 211.680 kb on + strand, within Atu0207at 211.736 kb on + strand, within Atu0207at 211.771 kb on - strand, within Atu0207at 211.817 kb on - strand, within Atu0207at 211.826 kb on - strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.843 kb on - strand, within Atu0207at 211.902 kb on + strand, within Atu0207at 211.911 kb on + strand, within Atu0207at 211.919 kb on - strand, within Atu0207at 211.953 kb on + strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.961 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.013 kb on + strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.021 kb on - strand, within Atu0207at 212.064 kb on - strand, within Atu0207

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C)
remove
208,623 + Atu0204 0.33 +2.1
208,660 + Atu0204 0.36 -1.7
208,691 + Atu0204 0.39 +0.9
208,742 + Atu0204 0.44 +0.7
208,750 - Atu0204 0.45 -1.2
208,766 + Atu0204 0.46 +0.9
208,771 + Atu0204 0.46 +1.3
208,779 - Atu0204 0.47 +0.9
208,806 - Atu0204 0.50 +1.6
208,834 - Atu0204 0.52 -1.7
208,834 - Atu0204 0.52 +0.3
208,834 - Atu0204 0.52 -0.6
208,847 + Atu0204 0.53 -0.0
208,855 - Atu0204 0.54 +0.0
208,855 - Atu0204 0.54 +0.6
208,892 + Atu0204 0.57 +0.6
208,905 + Atu0204 0.59 +1.1
208,984 + Atu0204 0.66 -1.2
209,029 - Atu0204 0.70 -0.6
209,062 + Atu0204 0.73 +1.5
209,192 - Atu0204 0.85 -1.5
209,216 + Atu0204 0.87 +0.8
209,216 + Atu0204 0.87 -0.7
209,216 + Atu0204 0.87 -0.8
209,216 + Atu0204 0.87 +0.9
209,271 - -0.4
209,342 + +1.1
209,350 + +0.1
209,429 - +1.4
209,637 - -2.4
209,718 - -0.1
209,719 + +2.8
209,719 - +0.5
209,839 - Atu0205 0.16 -0.9
209,920 - Atu0205 0.22 -0.4
210,053 + Atu0205 0.30 +1.5
210,084 - Atu0205 0.32 +0.4
210,097 - Atu0205 0.33 -1.1
210,097 - Atu0205 0.33 -1.3
210,126 + Atu0205 0.35 -0.5
210,265 - Atu0205 0.44 -2.0
210,265 - Atu0205 0.44 -1.0
210,265 - Atu0205 0.44 +0.5
210,292 + Atu0205 0.45 -1.7
210,385 - Atu0205 0.51 +0.9
210,405 + Atu0205 0.53 +0.6
210,453 - Atu0205 0.56 -0.6
210,480 + Atu0205 0.57 +1.5
210,569 - Atu0205 0.63 +0.8
210,587 + Atu0205 0.64 -2.1
210,595 - Atu0205 0.65 -2.7
210,632 - Atu0205 0.67 -1.2
210,648 - Atu0205 0.68 -1.7
210,713 + Atu0205 0.72 -0.8
210,728 - Atu0205 0.73 -2.7
210,768 - Atu0205 0.76 -0.7
210,768 - Atu0205 0.76 +0.1
210,791 - Atu0205 0.77 -0.9
210,809 - Atu0205 0.79 -0.6
210,837 - Atu0205 0.80 +1.3
210,859 - Atu0205 0.82 -1.8
210,859 - Atu0205 0.82 -1.2
210,866 - Atu0205 0.82 -0.5
211,082 + -0.1
211,189 + +0.7
211,306 - Atu0206 0.17 +1.7
211,397 + Atu0206 0.45 -0.4
211,397 + Atu0206 0.45 -1.8
211,539 - -0.4
211,581 + +0.5
211,612 + -0.9
211,642 + +0.2
211,646 - -0.2
211,647 + +0.8
211,650 - -1.1
211,680 + Atu0207 0.13 +0.4
211,736 + Atu0207 0.19 +0.3
211,771 - Atu0207 0.23 -1.0
211,817 - Atu0207 0.28 -1.0
211,826 - Atu0207 0.29 -0.8
211,833 + Atu0207 0.30 +1.1
211,833 + Atu0207 0.30 -0.6
211,843 - Atu0207 0.31 -0.8
211,902 + Atu0207 0.38 -0.6
211,911 + Atu0207 0.39 +0.4
211,919 - Atu0207 0.40 -0.9
211,953 + Atu0207 0.44 +1.1
211,956 - Atu0207 0.44 +0.0
211,956 - Atu0207 0.44 -0.9
211,961 + Atu0207 0.45 -0.8
212,008 + Atu0207 0.50 -0.7
212,008 + Atu0207 0.50 -0.2
212,013 + Atu0207 0.51 -1.1
212,016 - Atu0207 0.51 -0.2
212,016 - Atu0207 0.51 -0.3
212,016 - Atu0207 0.51 +0.1
212,016 - Atu0207 0.51 -0.2
212,021 - Atu0207 0.51 +1.1
212,064 - Atu0207 0.56 +0.8

Or see this region's nucleotide sequence