Strain Fitness in Escherichia coli BW25113 around b1188
Experiment: Chloramphenicol 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0025 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,234,004 | - | -0.1 | |||
1,234,099 | - | +1.5 | |||
1,234,102 | + | +1.1 | |||
1,234,112 | + | -0.7 | |||
1,234,114 | + | -0.6 | |||
1,234,118 | - | -0.4 | |||
1,234,118 | - | +0.9 | |||
1,234,157 | + | -0.9 | |||
1,234,222 | + | +3.7 | |||
1,234,299 | + | fadR | b1187 | 0.19 | +4.2 |
1,234,317 | - | fadR | b1187 | 0.22 | +3.3 |
1,234,331 | + | fadR | b1187 | 0.24 | +5.4 |
1,234,436 | - | +2.9 | |||
1,234,565 | + | fadR | b1187 | 0.56 | +4.4 |
1,234,673 | + | fadR | b1187 | 0.71 | +4.4 |
1,234,681 | - | fadR | b1187 | 0.72 | +4.5 |
1,234,720 | + | fadR | b1187 | 0.78 | +3.2 |
1,234,807 | + | fadR | b1187 | 0.90 | +1.7 |
1,234,807 | + | fadR | b1187 | 0.90 | +1.4 |
1,234,815 | - | +1.8 | |||
1,234,889 | - | +0.1 | |||
1,234,989 | + | +0.3 | |||
1,235,038 | - | -0.1 | |||
1,235,069 | + | -0.6 | |||
1,235,092 | - | ycgB | b1188 | 0.10 | +0.5 |
1,235,092 | - | ycgB | b1188 | 0.10 | +0.8 |
1,235,136 | - | ycgB | b1188 | 0.13 | +1.7 |
1,235,251 | + | ycgB | b1188 | 0.21 | -0.1 |
1,235,263 | + | ycgB | b1188 | 0.22 | -0.6 |
1,235,263 | + | ycgB | b1188 | 0.22 | +0.7 |
1,235,362 | - | ycgB | b1188 | 0.28 | -0.7 |
1,235,483 | - | ycgB | b1188 | 0.36 | -0.2 |
1,235,815 | - | ycgB | b1188 | 0.58 | -0.7 |
1,235,815 | - | ycgB | b1188 | 0.58 | +0.9 |
1,236,122 | + | ycgB | b1188 | 0.78 | +1.4 |
1,236,187 | - | ycgB | b1188 | 0.82 | -0.1 |
1,236,339 | - | +0.1 | |||
1,236,345 | - | -0.3 | |||
1,236,374 | + | -0.3 | |||
1,236,374 | + | -0.7 | |||
1,236,414 | - | -1.6 | |||
1,236,456 | - | -1.5 | |||
1,236,788 | - | +2.5 | |||
1,236,788 | - | -0.3 | |||
1,236,803 | + | -0.3 | |||
1,236,924 | - | dadA | b1189 | 0.10 | +0.3 |
1,237,037 | + | dadA | b1189 | 0.19 | +0.1 |
1,237,040 | - | dadA | b1189 | 0.19 | -0.7 |
1,237,146 | + | dadA | b1189 | 0.27 | -0.1 |
1,237,180 | + | dadA | b1189 | 0.30 | +0.0 |
1,237,213 | + | dadA | b1189 | 0.32 | -0.9 |
1,237,213 | + | dadA | b1189 | 0.32 | +2.0 |
1,237,218 | + | dadA | b1189 | 0.33 | -0.3 |
Or see this region's nucleotide sequence