Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_956

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_955 and PfGW456L13_956 are separated by 97 nucleotidesPfGW456L13_956 and PfGW456L13_957 are separated by 49 nucleotides PfGW456L13_955 - Protein of unknown function DUF81, at 1,068,919 to 1,069,701 _955 PfGW456L13_956 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 1,069,799 to 1,070,605 _956 PfGW456L13_957 - Thymidylate synthase (EC 2.1.1.45), at 1,070,655 to 1,071,626 _957 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1068.818 kb on - strandat 1068.934 kb on + strandat 1068.934 kb on + strandat 1068.935 kb on - strandat 1068.935 kb on - strandat 1068.935 kb on - strandat 1068.962 kb on + strandat 1068.962 kb on + strandat 1068.963 kb on - strandat 1069.098 kb on + strand, within PfGW456L13_955at 1069.098 kb on + strand, within PfGW456L13_955at 1069.493 kb on + strand, within PfGW456L13_955at 1069.493 kb on + strand, within PfGW456L13_955at 1069.493 kb on + strand, within PfGW456L13_955at 1069.493 kb on + strand, within PfGW456L13_955at 1069.493 kb on + strand, within PfGW456L13_955at 1069.493 kb on + strand, within PfGW456L13_955at 1069.493 kb on + strand, within PfGW456L13_955at 1069.494 kb on - strand, within PfGW456L13_955at 1069.494 kb on - strand, within PfGW456L13_955at 1069.540 kb on - strand, within PfGW456L13_955at 1069.540 kb on - strand, within PfGW456L13_955at 1069.555 kb on + strand, within PfGW456L13_955at 1069.694 kb on + strandat 1069.694 kb on + strandat 1069.695 kb on - strandat 1069.695 kb on - strandat 1069.737 kb on - strandat 1069.784 kb on + strandat 1070.568 kb on - strandat 1070.601 kb on + strandat 1070.649 kb on + strandat 1070.649 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,068,818 - +0.8
1,068,934 + -0.9
1,068,934 + -2.8
1,068,935 - -4.2
1,068,935 - -0.6
1,068,935 - +3.5
1,068,962 + +2.4
1,068,962 + -1.7
1,068,963 - -1.6
1,069,098 + PfGW456L13_955 0.23 +1.3
1,069,098 + PfGW456L13_955 0.23 +1.1
1,069,493 + PfGW456L13_955 0.73 +1.2
1,069,493 + PfGW456L13_955 0.73 -1.3
1,069,493 + PfGW456L13_955 0.73 +0.1
1,069,493 + PfGW456L13_955 0.73 -1.6
1,069,493 + PfGW456L13_955 0.73 +1.1
1,069,493 + PfGW456L13_955 0.73 +0.1
1,069,493 + PfGW456L13_955 0.73 -0.0
1,069,494 - PfGW456L13_955 0.73 -0.6
1,069,494 - PfGW456L13_955 0.73 +0.1
1,069,540 - PfGW456L13_955 0.79 +1.2
1,069,540 - PfGW456L13_955 0.79 -0.2
1,069,555 + PfGW456L13_955 0.81 +1.0
1,069,694 + +1.3
1,069,694 + -0.2
1,069,695 - +0.1
1,069,695 - -1.3
1,069,737 - +1.3
1,069,784 + +0.0
1,070,568 - -1.0
1,070,601 + +1.9
1,070,649 + -1.4
1,070,649 + -0.6

Or see this region's nucleotide sequence