Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_883

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_882 and PfGW456L13_883 are separated by 137 nucleotidesPfGW456L13_883 and PfGW456L13_884 are separated by 69 nucleotides PfGW456L13_882 - Transcription termination factor Rho, at 989,323 to 990,582 _882 PfGW456L13_883 - O-antigen acetylase, at 990,720 to 992,762 _883 PfGW456L13_884 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-), at 992,832 to 994,298 _884 Position (kb) 990 991 992 993Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 990.580 kb on + strandat 990.581 kb on - strandat 990.581 kb on - strandat 990.581 kb on - strandat 990.581 kb on - strandat 990.741 kb on - strandat 990.741 kb on - strandat 990.741 kb on - strandat 990.757 kb on + strandat 990.757 kb on + strandat 990.757 kb on + strandat 990.758 kb on - strandat 990.764 kb on + strandat 990.764 kb on + strandat 990.765 kb on - strandat 990.765 kb on - strandat 990.765 kb on - strandat 990.780 kb on + strandat 991.059 kb on + strand, within PfGW456L13_883at 991.134 kb on + strand, within PfGW456L13_883at 991.135 kb on - strand, within PfGW456L13_883at 991.203 kb on + strand, within PfGW456L13_883at 991.203 kb on + strand, within PfGW456L13_883at 991.203 kb on + strand, within PfGW456L13_883at 991.204 kb on - strand, within PfGW456L13_883at 991.204 kb on - strand, within PfGW456L13_883at 991.204 kb on - strand, within PfGW456L13_883at 991.204 kb on - strand, within PfGW456L13_883at 991.276 kb on + strand, within PfGW456L13_883at 991.277 kb on - strand, within PfGW456L13_883at 991.277 kb on - strand, within PfGW456L13_883at 991.277 kb on - strand, within PfGW456L13_883at 991.349 kb on + strand, within PfGW456L13_883at 991.350 kb on - strand, within PfGW456L13_883at 991.350 kb on - strand, within PfGW456L13_883at 991.366 kb on + strand, within PfGW456L13_883at 991.366 kb on + strand, within PfGW456L13_883at 991.366 kb on + strand, within PfGW456L13_883at 991.366 kb on + strand, within PfGW456L13_883at 991.367 kb on - strand, within PfGW456L13_883at 991.451 kb on + strand, within PfGW456L13_883at 991.451 kb on + strand, within PfGW456L13_883at 991.452 kb on - strand, within PfGW456L13_883at 991.482 kb on + strand, within PfGW456L13_883at 991.629 kb on + strand, within PfGW456L13_883at 991.630 kb on - strand, within PfGW456L13_883at 991.630 kb on - strand, within PfGW456L13_883at 991.639 kb on - strand, within PfGW456L13_883at 991.639 kb on - strand, within PfGW456L13_883at 991.663 kb on + strand, within PfGW456L13_883at 991.663 kb on + strand, within PfGW456L13_883at 991.664 kb on - strand, within PfGW456L13_883at 991.674 kb on + strand, within PfGW456L13_883at 991.674 kb on + strand, within PfGW456L13_883at 991.674 kb on + strand, within PfGW456L13_883at 991.674 kb on + strand, within PfGW456L13_883at 991.674 kb on + strand, within PfGW456L13_883at 991.675 kb on - strand, within PfGW456L13_883at 991.675 kb on - strand, within PfGW456L13_883at 991.723 kb on + strand, within PfGW456L13_883at 991.743 kb on + strand, within PfGW456L13_883at 991.744 kb on - strand, within PfGW456L13_883at 991.744 kb on - strand, within PfGW456L13_883at 991.915 kb on - strand, within PfGW456L13_883at 992.245 kb on + strand, within PfGW456L13_883at 992.245 kb on + strand, within PfGW456L13_883at 992.245 kb on + strand, within PfGW456L13_883at 992.245 kb on + strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.247 kb on + strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.307 kb on + strand, within PfGW456L13_883at 992.308 kb on - strand, within PfGW456L13_883at 992.308 kb on - strand, within PfGW456L13_883at 992.398 kb on + strand, within PfGW456L13_883at 992.398 kb on + strand, within PfGW456L13_883at 992.399 kb on - strand, within PfGW456L13_883at 992.531 kb on - strand, within PfGW456L13_883at 992.560 kb on + strandat 992.637 kb on + strandat 992.637 kb on + strandat 992.637 kb on + strandat 992.638 kb on - strandat 992.638 kb on - strandat 992.638 kb on - strandat 992.638 kb on - strandat 992.638 kb on - strandat 992.760 kb on + strandat 992.760 kb on + strandat 992.760 kb on + strandat 992.760 kb on + strandat 992.761 kb on - strandat 992.770 kb on + strandat 992.770 kb on + strandat 992.770 kb on + strandat 992.770 kb on + strandat 992.797 kb on + strandat 992.798 kb on - strandat 992.798 kb on - strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.805 kb on - strandat 992.805 kb on - strandat 992.805 kb on - strandat 992.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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990,580 + -2.5
990,581 - +1.1
990,581 - +1.2
990,581 - -3.1
990,581 - -0.9
990,741 - -0.9
990,741 - -2.0
990,741 - +2.1
990,757 + +0.6
990,757 + -1.2
990,757 + +2.4
990,758 - +1.5
990,764 + +1.7
990,764 + +0.8
990,765 - -0.9
990,765 - -0.8
990,765 - -0.9
990,780 + +0.4
991,059 + PfGW456L13_883 0.17 +1.2
991,134 + PfGW456L13_883 0.20 +0.6
991,135 - PfGW456L13_883 0.20 -3.2
991,203 + PfGW456L13_883 0.24 +0.1
991,203 + PfGW456L13_883 0.24 +1.3
991,203 + PfGW456L13_883 0.24 +1.6
991,204 - PfGW456L13_883 0.24 +1.0
991,204 - PfGW456L13_883 0.24 +0.6
991,204 - PfGW456L13_883 0.24 +2.1
991,204 - PfGW456L13_883 0.24 -0.6
991,276 + PfGW456L13_883 0.27 +0.2
991,277 - PfGW456L13_883 0.27 +1.6
991,277 - PfGW456L13_883 0.27 -0.2
991,277 - PfGW456L13_883 0.27 -0.3
991,349 + PfGW456L13_883 0.31 -1.4
991,350 - PfGW456L13_883 0.31 +1.6
991,350 - PfGW456L13_883 0.31 +0.3
991,366 + PfGW456L13_883 0.32 +0.8
991,366 + PfGW456L13_883 0.32 +1.5
991,366 + PfGW456L13_883 0.32 +2.1
991,366 + PfGW456L13_883 0.32 +2.4
991,367 - PfGW456L13_883 0.32 +2.7
991,451 + PfGW456L13_883 0.36 -1.4
991,451 + PfGW456L13_883 0.36 +0.1
991,452 - PfGW456L13_883 0.36 +1.7
991,482 + PfGW456L13_883 0.37 +0.2
991,629 + PfGW456L13_883 0.44 +1.2
991,630 - PfGW456L13_883 0.45 +1.7
991,630 - PfGW456L13_883 0.45 +1.6
991,639 - PfGW456L13_883 0.45 +1.5
991,639 - PfGW456L13_883 0.45 -0.8
991,663 + PfGW456L13_883 0.46 +2.2
991,663 + PfGW456L13_883 0.46 +0.8
991,664 - PfGW456L13_883 0.46 -0.4
991,674 + PfGW456L13_883 0.47 +1.9
991,674 + PfGW456L13_883 0.47 -3.0
991,674 + PfGW456L13_883 0.47 +1.4
991,674 + PfGW456L13_883 0.47 +0.7
991,674 + PfGW456L13_883 0.47 -0.5
991,675 - PfGW456L13_883 0.47 +0.2
991,675 - PfGW456L13_883 0.47 +1.8
991,723 + PfGW456L13_883 0.49 +1.4
991,743 + PfGW456L13_883 0.50 +0.0
991,744 - PfGW456L13_883 0.50 +2.6
991,744 - PfGW456L13_883 0.50 +1.5
991,915 - PfGW456L13_883 0.58 +1.3
992,245 + PfGW456L13_883 0.75 -2.7
992,245 + PfGW456L13_883 0.75 +1.2
992,245 + PfGW456L13_883 0.75 +0.2
992,245 + PfGW456L13_883 0.75 -3.4
992,246 - PfGW456L13_883 0.75 -1.8
992,246 - PfGW456L13_883 0.75 +3.9
992,246 - PfGW456L13_883 0.75 +1.2
992,246 - PfGW456L13_883 0.75 +1.5
992,246 - PfGW456L13_883 0.75 +2.2
992,246 - PfGW456L13_883 0.75 +1.3
992,246 - PfGW456L13_883 0.75 +4.3
992,247 + PfGW456L13_883 0.75 +0.8
992,248 - PfGW456L13_883 0.75 +1.3
992,248 - PfGW456L13_883 0.75 +2.8
992,248 - PfGW456L13_883 0.75 +1.6
992,248 - PfGW456L13_883 0.75 +1.7
992,248 - PfGW456L13_883 0.75 +0.2
992,248 - PfGW456L13_883 0.75 +3.4
992,307 + PfGW456L13_883 0.78 +1.8
992,308 - PfGW456L13_883 0.78 +1.4
992,308 - PfGW456L13_883 0.78 +2.1
992,398 + PfGW456L13_883 0.82 +2.3
992,398 + PfGW456L13_883 0.82 +2.4
992,399 - PfGW456L13_883 0.82 +2.1
992,531 - PfGW456L13_883 0.89 +0.4
992,560 + +3.1
992,637 + -0.9
992,637 + +1.4
992,637 + +2.3
992,638 - +1.9
992,638 - +1.7
992,638 - -0.2
992,638 - +2.5
992,638 - +1.0
992,760 + +1.0
992,760 + +1.2
992,760 + +0.0
992,760 + -1.5
992,761 - -0.9
992,770 + -0.8
992,770 + -0.6
992,770 + +1.5
992,770 + -0.1
992,797 + +0.8
992,798 - -1.2
992,798 - +0.0
992,804 + +0.6
992,804 + -3.3
992,804 + -2.6
992,804 + +0.7
992,804 + -0.1
992,804 + +0.1
992,804 + +0.1
992,804 + -1.5
992,804 + +0.4
992,804 + -1.4
992,804 + +0.0
992,804 + -1.7
992,804 + -2.3
992,804 + -0.7
992,804 + +0.1
992,804 + -0.3
992,804 + -1.2
992,804 + -1.5
992,804 + -1.4
992,805 - -1.0
992,805 - +0.6
992,805 - +0.8
992,805 - +0.7

Or see this region's nucleotide sequence