Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_775

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_774 and PfGW456L13_775 are separated by 44 nucleotidesPfGW456L13_775 and PfGW456L13_776 are separated by 6 nucleotides PfGW456L13_774 - Ferric siderophore transport system, periplasmic binding protein TonB, at 879,249 to 879,950 _774 PfGW456L13_775 - Biopolymer transport protein ExbD/TolR, at 879,995 to 880,423 _775 PfGW456L13_776 - MotA/TolQ/ExbB proton channel family protein, at 880,430 to 881,344 _776 Position (kb) 879 880 881Strain fitness (log2 ratio) -2 -1 0 1 2at 879.080 kb on - strandat 879.203 kb on - strandat 879.203 kb on - strandat 879.242 kb on + strandat 879.243 kb on - strandat 879.243 kb on - strandat 879.243 kb on - strandat 879.243 kb on - strandat 879.250 kb on + strandat 879.251 kb on - strandat 879.251 kb on - strandat 879.968 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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879,080 - +0.6
879,203 - +1.8
879,203 - -1.8
879,242 + +1.3
879,243 - +0.8
879,243 - -0.1
879,243 - +0.6
879,243 - +0.7
879,250 + -0.9
879,251 - +0.7
879,251 - +0.4
879,968 - -1.9

Or see this region's nucleotide sequence