Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_773 and PfGW456L13_774 are separated by 283 nucleotides PfGW456L13_774 and PfGW456L13_775 are separated by 44 nucleotides PfGW456L13_775 and PfGW456L13_776 are separated by 6 nucleotides
PfGW456L13_773 - Hydrogen peroxide-inducible genes activator, at 878,036 to 878,965
_773
PfGW456L13_774 - Ferric siderophore transport system, periplasmic binding protein TonB, at 879,249 to 879,950
_774
PfGW456L13_775 - Biopolymer transport protein ExbD/TolR, at 879,995 to 880,423
_775
PfGW456L13_776 - MotA/TolQ/ExbB proton channel family protein, at 880,430 to 881,344
_776
Position (kb) 879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 878.469 kb on + strand, within PfGW456L13_773 at 878.469 kb on + strand, within PfGW456L13_773 at 878.469 kb on + strand, within PfGW456L13_773 at 878.470 kb on - strand, within PfGW456L13_773 at 878.470 kb on - strand, within PfGW456L13_773 at 878.470 kb on - strand, within PfGW456L13_773 at 878.485 kb on - strand, within PfGW456L13_773 at 878.598 kb on + strand, within PfGW456L13_773 at 878.598 kb on + strand, within PfGW456L13_773 at 878.598 kb on + strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.656 kb on - strand, within PfGW456L13_773 at 878.656 kb on - strand, within PfGW456L13_773 at 878.670 kb on + strand, within PfGW456L13_773 at 878.670 kb on + strand, within PfGW456L13_773 at 878.670 kb on + strand, within PfGW456L13_773 at 878.670 kb on + strand, within PfGW456L13_773 at 878.754 kb on - strand, within PfGW456L13_773 at 878.943 kb on + strand at 878.943 kb on + strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.948 kb on + strand at 878.948 kb on + strand at 878.948 kb on + strand at 878.949 kb on - strand at 878.949 kb on - strand at 878.949 kb on - strand at 878.949 kb on - strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.966 kb on - strand at 878.966 kb on - strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.981 kb on - strand at 878.981 kb on - strand at 878.981 kb on - strand at 878.981 kb on - strand at 879.080 kb on - strand at 879.203 kb on - strand at 879.203 kb on - strand at 879.242 kb on + strand at 879.243 kb on - strand at 879.243 kb on - strand at 879.243 kb on - strand at 879.243 kb on - strand at 879.250 kb on + strand at 879.251 kb on - strand at 879.251 kb on - strand at 879.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 878,469 + PfGW456L13_773 0.47 +0.3 878,469 + PfGW456L13_773 0.47 +0.3 878,469 + PfGW456L13_773 0.47 -2.4 878,470 - PfGW456L13_773 0.47 -1.5 878,470 - PfGW456L13_773 0.47 -0.4 878,470 - PfGW456L13_773 0.47 -3.1 878,485 - PfGW456L13_773 0.48 -0.2 878,598 + PfGW456L13_773 0.60 -0.9 878,598 + PfGW456L13_773 0.60 -0.1 878,598 + PfGW456L13_773 0.60 +1.7 878,599 - PfGW456L13_773 0.61 +0.1 878,599 - PfGW456L13_773 0.61 +0.4 878,599 - PfGW456L13_773 0.61 -2.7 878,599 - PfGW456L13_773 0.61 +0.0 878,599 - PfGW456L13_773 0.61 +0.1 878,656 - PfGW456L13_773 0.67 +0.9 878,656 - PfGW456L13_773 0.67 +0.6 878,670 + PfGW456L13_773 0.68 +0.3 878,670 + PfGW456L13_773 0.68 -2.2 878,670 + PfGW456L13_773 0.68 -0.1 878,670 + PfGW456L13_773 0.68 +0.9 878,754 - PfGW456L13_773 0.77 +1.2 878,943 + -0.9 878,943 + +0.4 878,944 - +2.7 878,944 - +0.9 878,944 - +1.8 878,944 - +0.0 878,944 - +1.3 878,944 - +2.3 878,944 - -2.9 878,944 - -2.2 878,948 + +1.3 878,948 + +1.1 878,948 + -2.2 878,949 - -1.2 878,949 - +0.4 878,949 - +1.5 878,949 - +0.6 878,965 + +1.3 878,965 + +0.5 878,965 + +0.3 878,965 + +1.9 878,965 + -2.5 878,965 + +1.1 878,965 + -1.2 878,965 + -3.5 878,966 - -1.4 878,966 - -1.8 878,980 + -0.2 878,980 + +0.8 878,980 + -1.4 878,980 + -1.0 878,980 + +0.7 878,980 + -4.3 878,980 + -1.7 878,980 + -3.1 878,980 + -0.0 878,980 + +1.8 878,981 - +0.9 878,981 - +1.0 878,981 - -2.8 878,981 - -0.5 879,080 - +0.6 879,203 - +1.8 879,203 - -1.8 879,242 + +1.3 879,243 - +0.8 879,243 - -0.1 879,243 - +0.6 879,243 - +0.7 879,250 + -0.9 879,251 - +0.7 879,251 - +0.4 879,968 - -1.9
Or see this region's nucleotide sequence