Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_755

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_754 and PfGW456L13_755 are separated by 15 nucleotidesPfGW456L13_755 and PfGW456L13_756 are separated by 165 nucleotides PfGW456L13_754 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 857,654 to 859,936 _754 PfGW456L13_755 - Phosphate transport system permease protein PstA (TC 3.A.1.7.1), at 859,952 to 861,622 _755 PfGW456L13_756 - Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1), at 861,788 to 862,621 _756 Position (kb) 859 860 861 862Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 858.958 kb on + strand, within PfGW456L13_754at 858.958 kb on + strand, within PfGW456L13_754at 858.959 kb on - strand, within PfGW456L13_754at 858.962 kb on + strand, within PfGW456L13_754at 858.962 kb on + strand, within PfGW456L13_754at 858.962 kb on + strand, within PfGW456L13_754at 858.962 kb on + strand, within PfGW456L13_754at 858.962 kb on + strand, within PfGW456L13_754at 858.962 kb on + strand, within PfGW456L13_754at 858.962 kb on + strand, within PfGW456L13_754at 858.962 kb on + strand, within PfGW456L13_754at 858.963 kb on - strand, within PfGW456L13_754at 858.963 kb on - strand, within PfGW456L13_754at 858.963 kb on - strand, within PfGW456L13_754at 858.963 kb on - strand, within PfGW456L13_754at 858.963 kb on - strand, within PfGW456L13_754at 858.963 kb on - strand, within PfGW456L13_754at 858.963 kb on - strand, within PfGW456L13_754at 858.963 kb on - strand, within PfGW456L13_754at 858.963 kb on - strand, within PfGW456L13_754at 859.052 kb on + strand, within PfGW456L13_754at 859.097 kb on + strand, within PfGW456L13_754at 859.106 kb on + strand, within PfGW456L13_754at 859.106 kb on + strand, within PfGW456L13_754at 859.106 kb on + strand, within PfGW456L13_754at 859.106 kb on + strand, within PfGW456L13_754at 859.107 kb on - strand, within PfGW456L13_754at 859.107 kb on - strand, within PfGW456L13_754at 859.107 kb on - strand, within PfGW456L13_754at 859.391 kb on + strand, within PfGW456L13_754at 859.391 kb on + strand, within PfGW456L13_754at 859.391 kb on + strand, within PfGW456L13_754at 859.391 kb on + strand, within PfGW456L13_754at 859.391 kb on + strand, within PfGW456L13_754at 859.391 kb on + strand, within PfGW456L13_754at 859.392 kb on - strand, within PfGW456L13_754at 859.392 kb on - strand, within PfGW456L13_754at 859.392 kb on - strand, within PfGW456L13_754at 859.392 kb on - strand, within PfGW456L13_754at 859.469 kb on + strand, within PfGW456L13_754at 859.469 kb on + strand, within PfGW456L13_754at 859.491 kb on + strand, within PfGW456L13_754at 859.532 kb on + strand, within PfGW456L13_754at 859.532 kb on + strand, within PfGW456L13_754at 859.532 kb on + strand, within PfGW456L13_754at 859.532 kb on + strand, within PfGW456L13_754at 859.532 kb on + strand, within PfGW456L13_754at 859.533 kb on - strand, within PfGW456L13_754at 859.533 kb on - strand, within PfGW456L13_754at 859.533 kb on - strand, within PfGW456L13_754at 859.533 kb on - strand, within PfGW456L13_754at 859.533 kb on - strand, within PfGW456L13_754at 859.533 kb on - strand, within PfGW456L13_754at 859.923 kb on - strandat 859.935 kb on - strandat 859.943 kb on + strandat 859.943 kb on + strandat 859.943 kb on + strandat 859.943 kb on + strandat 859.943 kb on + strandat 859.944 kb on - strandat 859.944 kb on - strandat 860.117 kb on + strandat 860.117 kb on + strandat 860.117 kb on + strandat 860.117 kb on + strandat 860.117 kb on + strandat 860.117 kb on + strandat 860.118 kb on - strandat 860.118 kb on - strandat 860.118 kb on - strandat 860.375 kb on + strand, within PfGW456L13_755at 860.375 kb on + strand, within PfGW456L13_755at 860.375 kb on + strand, within PfGW456L13_755at 860.376 kb on - strand, within PfGW456L13_755at 860.376 kb on - strand, within PfGW456L13_755at 860.376 kb on - strand, within PfGW456L13_755at 860.636 kb on + strand, within PfGW456L13_755at 860.945 kb on + strand, within PfGW456L13_755at 860.945 kb on + strand, within PfGW456L13_755at 860.945 kb on + strand, within PfGW456L13_755at 860.945 kb on + strand, within PfGW456L13_755at 860.957 kb on + strand, within PfGW456L13_755at 861.062 kb on + strand, within PfGW456L13_755at 861.063 kb on - strand, within PfGW456L13_755at 861.063 kb on - strand, within PfGW456L13_755at 861.063 kb on - strand, within PfGW456L13_755at 861.378 kb on + strand, within PfGW456L13_755at 861.378 kb on + strand, within PfGW456L13_755at 861.412 kb on + strand, within PfGW456L13_755at 861.412 kb on + strand, within PfGW456L13_755at 861.412 kb on + strand, within PfGW456L13_755at 861.416 kb on + strand, within PfGW456L13_755at 861.417 kb on - strand, within PfGW456L13_755at 861.417 kb on - strand, within PfGW456L13_755at 861.417 kb on - strand, within PfGW456L13_755at 861.422 kb on + strand, within PfGW456L13_755at 861.422 kb on + strand, within PfGW456L13_755at 861.467 kb on + strandat 861.467 kb on + strandat 861.467 kb on + strandat 861.467 kb on + strandat 861.467 kb on + strandat 861.467 kb on + strandat 861.467 kb on + strandat 861.467 kb on + strandat 861.468 kb on - strandat 861.468 kb on - strandat 861.468 kb on - strandat 861.468 kb on - strandat 861.518 kb on + strandat 861.518 kb on + strandat 861.575 kb on + strandat 861.575 kb on + strandat 861.575 kb on + strandat 861.575 kb on + strandat 861.575 kb on + strandat 861.575 kb on + strandat 861.576 kb on - strandat 861.602 kb on + strandat 861.602 kb on + strandat 861.602 kb on + strandat 861.602 kb on + strandat 861.602 kb on + strandat 861.602 kb on + strandat 861.602 kb on + strandat 861.602 kb on + strandat 861.602 kb on + strandat 861.603 kb on - strandat 861.603 kb on - strandat 861.617 kb on - strandat 861.633 kb on + strandat 861.633 kb on + strandat 861.634 kb on - strandat 861.660 kb on + strandat 861.660 kb on + strandat 861.660 kb on + strandat 861.660 kb on + strandat 861.661 kb on - strandat 861.713 kb on + strandat 861.805 kb on + strandat 861.806 kb on - strandat 861.905 kb on + strand, within PfGW456L13_756at 861.905 kb on + strand, within PfGW456L13_756at 861.926 kb on + strand, within PfGW456L13_756at 862.070 kb on + strand, within PfGW456L13_756at 862.085 kb on + strand, within PfGW456L13_756at 862.169 kb on + strand, within PfGW456L13_756at 862.368 kb on + strand, within PfGW456L13_756at 862.369 kb on - strand, within PfGW456L13_756at 862.369 kb on - strand, within PfGW456L13_756at 862.405 kb on + strand, within PfGW456L13_756at 862.405 kb on + strand, within PfGW456L13_756at 862.406 kb on - strand, within PfGW456L13_756at 862.437 kb on - strand, within PfGW456L13_756at 862.508 kb on + strand, within PfGW456L13_756at 862.509 kb on - strand, within PfGW456L13_756at 862.523 kb on + strand, within PfGW456L13_756at 862.523 kb on + strand, within PfGW456L13_756at 862.523 kb on + strand, within PfGW456L13_756at 862.523 kb on + strand, within PfGW456L13_756at 862.523 kb on + strand, within PfGW456L13_756at 862.523 kb on + strand, within PfGW456L13_756at 862.523 kb on + strand, within PfGW456L13_756at 862.523 kb on + strand, within PfGW456L13_756at 862.598 kb on + strandat 862.598 kb on + strandat 862.619 kb on + strandat 862.619 kb on + strandat 862.619 kb on + strandat 862.620 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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858,958 + PfGW456L13_754 0.57 -3.1
858,958 + PfGW456L13_754 0.57 -2.4
858,959 - PfGW456L13_754 0.57 -0.9
858,962 + PfGW456L13_754 0.57 -3.4
858,962 + PfGW456L13_754 0.57 -2.9
858,962 + PfGW456L13_754 0.57 +1.3
858,962 + PfGW456L13_754 0.57 -1.0
858,962 + PfGW456L13_754 0.57 +0.1
858,962 + PfGW456L13_754 0.57 -1.9
858,962 + PfGW456L13_754 0.57 -0.7
858,962 + PfGW456L13_754 0.57 -0.9
858,963 - PfGW456L13_754 0.57 +1.0
858,963 - PfGW456L13_754 0.57 -0.0
858,963 - PfGW456L13_754 0.57 +0.8
858,963 - PfGW456L13_754 0.57 -1.2
858,963 - PfGW456L13_754 0.57 -0.1
858,963 - PfGW456L13_754 0.57 -0.7
858,963 - PfGW456L13_754 0.57 -0.7
858,963 - PfGW456L13_754 0.57 -1.4
858,963 - PfGW456L13_754 0.57 -0.9
859,052 + PfGW456L13_754 0.61 -3.0
859,097 + PfGW456L13_754 0.63 +0.0
859,106 + PfGW456L13_754 0.64 -3.9
859,106 + PfGW456L13_754 0.64 -1.2
859,106 + PfGW456L13_754 0.64 +0.0
859,106 + PfGW456L13_754 0.64 -0.9
859,107 - PfGW456L13_754 0.64 -1.6
859,107 - PfGW456L13_754 0.64 -1.4
859,107 - PfGW456L13_754 0.64 -2.6
859,391 + PfGW456L13_754 0.76 -3.8
859,391 + PfGW456L13_754 0.76 -1.0
859,391 + PfGW456L13_754 0.76 -1.5
859,391 + PfGW456L13_754 0.76 -0.6
859,391 + PfGW456L13_754 0.76 -0.9
859,391 + PfGW456L13_754 0.76 -3.8
859,392 - PfGW456L13_754 0.76 -0.8
859,392 - PfGW456L13_754 0.76 +0.5
859,392 - PfGW456L13_754 0.76 -0.1
859,392 - PfGW456L13_754 0.76 +1.4
859,469 + PfGW456L13_754 0.80 -1.2
859,469 + PfGW456L13_754 0.80 -3.2
859,491 + PfGW456L13_754 0.80 +0.2
859,532 + PfGW456L13_754 0.82 +0.4
859,532 + PfGW456L13_754 0.82 +0.7
859,532 + PfGW456L13_754 0.82 -2.3
859,532 + PfGW456L13_754 0.82 -2.0
859,532 + PfGW456L13_754 0.82 -2.2
859,533 - PfGW456L13_754 0.82 -2.5
859,533 - PfGW456L13_754 0.82 -3.5
859,533 - PfGW456L13_754 0.82 -0.8
859,533 - PfGW456L13_754 0.82 -0.7
859,533 - PfGW456L13_754 0.82 -1.8
859,533 - PfGW456L13_754 0.82 +0.0
859,923 - +0.8
859,935 - -1.3
859,943 + -1.4
859,943 + -3.5
859,943 + -0.5
859,943 + -0.2
859,943 + -0.2
859,944 - +2.1
859,944 - -0.3
860,117 + -2.5
860,117 + -2.3
860,117 + +0.4
860,117 + -0.3
860,117 + -3.0
860,117 + -1.3
860,118 - -3.3
860,118 - -0.6
860,118 - -0.7
860,375 + PfGW456L13_755 0.25 -0.4
860,375 + PfGW456L13_755 0.25 -0.3
860,375 + PfGW456L13_755 0.25 +0.8
860,376 - PfGW456L13_755 0.25 -0.9
860,376 - PfGW456L13_755 0.25 -0.3
860,376 - PfGW456L13_755 0.25 -1.7
860,636 + PfGW456L13_755 0.41 -0.2
860,945 + PfGW456L13_755 0.59 +0.1
860,945 + PfGW456L13_755 0.59 -0.9
860,945 + PfGW456L13_755 0.59 -0.4
860,945 + PfGW456L13_755 0.59 -0.2
860,957 + PfGW456L13_755 0.60 -0.2
861,062 + PfGW456L13_755 0.66 +1.0
861,063 - PfGW456L13_755 0.66 -1.0
861,063 - PfGW456L13_755 0.66 -1.8
861,063 - PfGW456L13_755 0.66 -2.3
861,378 + PfGW456L13_755 0.85 +1.6
861,378 + PfGW456L13_755 0.85 -2.2
861,412 + PfGW456L13_755 0.87 -1.3
861,412 + PfGW456L13_755 0.87 -1.0
861,412 + PfGW456L13_755 0.87 -0.0
861,416 + PfGW456L13_755 0.88 +1.4
861,417 - PfGW456L13_755 0.88 -0.3
861,417 - PfGW456L13_755 0.88 -0.8
861,417 - PfGW456L13_755 0.88 -0.4
861,422 + PfGW456L13_755 0.88 -1.3
861,422 + PfGW456L13_755 0.88 -2.0
861,467 + -1.1
861,467 + -1.3
861,467 + +0.1
861,467 + -0.4
861,467 + +1.3
861,467 + +0.2
861,467 + -0.6
861,467 + -2.3
861,468 - -0.8
861,468 - -3.4
861,468 - -2.7
861,468 - -0.9
861,518 + -2.5
861,518 + -0.9
861,575 + -0.8
861,575 + -1.9
861,575 + -1.3
861,575 + -1.2
861,575 + -0.1
861,575 + +1.2
861,576 - -2.4
861,602 + -3.8
861,602 + +1.0
861,602 + -1.1
861,602 + -1.9
861,602 + +0.9
861,602 + +0.8
861,602 + -2.2
861,602 + +0.8
861,602 + +1.3
861,603 - +0.1
861,603 - -0.5
861,617 - +0.4
861,633 + +1.9
861,633 + -1.7
861,634 - +0.6
861,660 + -2.9
861,660 + -3.7
861,660 + -2.4
861,660 + -3.1
861,661 - -0.0
861,713 + +0.2
861,805 + -2.7
861,806 - -1.4
861,905 + PfGW456L13_756 0.14 -1.7
861,905 + PfGW456L13_756 0.14 -1.7
861,926 + PfGW456L13_756 0.17 +0.1
862,070 + PfGW456L13_756 0.34 +1.2
862,085 + PfGW456L13_756 0.36 -2.3
862,169 + PfGW456L13_756 0.46 -2.3
862,368 + PfGW456L13_756 0.70 -2.3
862,369 - PfGW456L13_756 0.70 -1.5
862,369 - PfGW456L13_756 0.70 -1.2
862,405 + PfGW456L13_756 0.74 +1.2
862,405 + PfGW456L13_756 0.74 -2.8
862,406 - PfGW456L13_756 0.74 -2.1
862,437 - PfGW456L13_756 0.78 +0.8
862,508 + PfGW456L13_756 0.86 -0.9
862,509 - PfGW456L13_756 0.86 +0.1
862,523 + PfGW456L13_756 0.88 -1.2
862,523 + PfGW456L13_756 0.88 -2.6
862,523 + PfGW456L13_756 0.88 -1.2
862,523 + PfGW456L13_756 0.88 +0.6
862,523 + PfGW456L13_756 0.88 -1.4
862,523 + PfGW456L13_756 0.88 -2.3
862,523 + PfGW456L13_756 0.88 -0.9
862,523 + PfGW456L13_756 0.88 -2.4
862,598 + -0.9
862,598 + -2.1
862,619 + -0.3
862,619 + +1.7
862,619 + +0.1
862,620 - -1.7

Or see this region's nucleotide sequence