Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_620 and PfGW456L13_621 are separated by 224 nucleotides PfGW456L13_621 and PfGW456L13_622 are separated by 830 nucleotides
PfGW456L13_620 - Radical SAM domain protein, at 710,646 to 711,704
_620
PfGW456L13_621 - hypothetical protein, at 711,929 to 712,231
_621
PfGW456L13_622 - Protein tyrosine/serine phosphatase, at 713,062 to 713,619
_622
Position (kb) 711
712
713 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 710.935 kb on + strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 711.204 kb on + strand, within PfGW456L13_620 at 711.204 kb on + strand, within PfGW456L13_620 at 711.204 kb on + strand, within PfGW456L13_620 at 711.205 kb on - strand, within PfGW456L13_620 at 711.205 kb on - strand, within PfGW456L13_620 at 711.255 kb on + strand, within PfGW456L13_620 at 711.255 kb on + strand, within PfGW456L13_620 at 711.255 kb on + strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.267 kb on - strand, within PfGW456L13_620 at 711.283 kb on + strand, within PfGW456L13_620 at 711.283 kb on + strand, within PfGW456L13_620 at 711.284 kb on - strand, within PfGW456L13_620 at 711.284 kb on - strand, within PfGW456L13_620 at 711.284 kb on - strand, within PfGW456L13_620 at 711.284 kb on - strand, within PfGW456L13_620 at 711.346 kb on + strand, within PfGW456L13_620 at 711.442 kb on + strand, within PfGW456L13_620 at 711.442 kb on + strand, within PfGW456L13_620 at 711.443 kb on - strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.470 kb on - strand, within PfGW456L13_620 at 711.470 kb on - strand, within PfGW456L13_620 at 711.470 kb on - strand, within PfGW456L13_620 at 711.470 kb on - strand, within PfGW456L13_620 at 711.536 kb on + strand, within PfGW456L13_620 at 711.536 kb on + strand, within PfGW456L13_620 at 711.536 kb on + strand, within PfGW456L13_620 at 711.536 kb on + strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.597 kb on + strand, within PfGW456L13_620 at 711.597 kb on + strand, within PfGW456L13_620 at 711.598 kb on - strand, within PfGW456L13_620 at 711.698 kb on + strand at 711.698 kb on + strand at 711.699 kb on - strand at 711.725 kb on - strand at 711.805 kb on + strand at 711.805 kb on + strand at 711.805 kb on + strand at 711.805 kb on + strand at 711.806 kb on - strand at 711.806 kb on - strand at 711.806 kb on - strand at 711.806 kb on - strand at 711.854 kb on + strand at 711.874 kb on - strand at 711.876 kb on - strand at 711.925 kb on - strand at 711.953 kb on - strand at 712.085 kb on + strand, within PfGW456L13_621 at 712.085 kb on + strand, within PfGW456L13_621 at 712.188 kb on + strand, within PfGW456L13_621 at 712.189 kb on - strand, within PfGW456L13_621 at 712.208 kb on + strand at 712.209 kb on - strand at 712.209 kb on - strand at 712.209 kb on - strand at 712.209 kb on - strand at 712.209 kb on - strand at 712.216 kb on + strand at 712.261 kb on + strand at 712.262 kb on - strand at 712.262 kb on - strand at 712.345 kb on - strand at 712.345 kb on - strand at 712.345 kb on - strand at 712.345 kb on - strand at 712.348 kb on + strand at 712.349 kb on - strand at 712.349 kb on - strand at 712.382 kb on - strand at 712.386 kb on - strand at 712.394 kb on - strand at 712.396 kb on + strand at 712.397 kb on - strand at 712.397 kb on - strand at 712.475 kb on + strand at 712.477 kb on + strand at 712.547 kb on + strand at 712.612 kb on + strand at 712.630 kb on + strand at 712.635 kb on + strand at 712.635 kb on + strand at 712.636 kb on - strand at 712.641 kb on + strand at 712.719 kb on + strand at 712.719 kb on + strand at 712.719 kb on + strand at 712.721 kb on + strand at 712.722 kb on - strand at 712.742 kb on + strand at 712.743 kb on - strand at 712.808 kb on + strand at 712.809 kb on - strand at 712.809 kb on - strand at 712.809 kb on - strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.862 kb on - strand at 712.862 kb on - strand at 712.864 kb on - strand at 712.994 kb on + strand at 712.995 kb on - strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.093 kb on + strand at 713.093 kb on + strand at 713.094 kb on - strand at 713.094 kb on - strand at 713.094 kb on - strand at 713.094 kb on - strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 710,935 + PfGW456L13_620 0.27 -0.3 710,936 - PfGW456L13_620 0.27 -0.3 710,936 - PfGW456L13_620 0.27 -3.8 710,936 - PfGW456L13_620 0.27 -1.4 710,936 - PfGW456L13_620 0.27 +1.1 710,936 - PfGW456L13_620 0.27 -2.7 711,204 + PfGW456L13_620 0.53 -2.7 711,204 + PfGW456L13_620 0.53 -0.4 711,204 + PfGW456L13_620 0.53 -2.4 711,205 - PfGW456L13_620 0.53 -2.3 711,205 - PfGW456L13_620 0.53 -0.4 711,255 + PfGW456L13_620 0.58 +0.7 711,255 + PfGW456L13_620 0.58 -0.8 711,255 + PfGW456L13_620 0.58 -1.1 711,256 - PfGW456L13_620 0.58 +0.2 711,256 - PfGW456L13_620 0.58 -1.5 711,256 - PfGW456L13_620 0.58 +0.5 711,256 - PfGW456L13_620 0.58 -0.5 711,256 - PfGW456L13_620 0.58 +1.7 711,256 - PfGW456L13_620 0.58 -1.9 711,267 - PfGW456L13_620 0.59 -2.9 711,283 + PfGW456L13_620 0.60 -2.3 711,283 + PfGW456L13_620 0.60 -3.8 711,284 - PfGW456L13_620 0.60 -3.2 711,284 - PfGW456L13_620 0.60 +1.3 711,284 - PfGW456L13_620 0.60 +1.0 711,284 - PfGW456L13_620 0.60 +0.3 711,346 + PfGW456L13_620 0.66 -3.2 711,442 + PfGW456L13_620 0.75 +0.1 711,442 + PfGW456L13_620 0.75 -2.4 711,443 - PfGW456L13_620 0.75 -1.4 711,469 + PfGW456L13_620 0.78 -1.7 711,469 + PfGW456L13_620 0.78 -3.2 711,469 + PfGW456L13_620 0.78 +0.3 711,469 + PfGW456L13_620 0.78 -2.9 711,469 + PfGW456L13_620 0.78 -3.6 711,469 + PfGW456L13_620 0.78 -4.3 711,469 + PfGW456L13_620 0.78 -0.5 711,470 - PfGW456L13_620 0.78 -0.7 711,470 - PfGW456L13_620 0.78 -3.0 711,470 - PfGW456L13_620 0.78 +0.9 711,470 - PfGW456L13_620 0.78 -3.4 711,536 + PfGW456L13_620 0.84 -2.0 711,536 + PfGW456L13_620 0.84 -0.6 711,536 + PfGW456L13_620 0.84 +0.8 711,536 + PfGW456L13_620 0.84 -0.4 711,537 - PfGW456L13_620 0.84 -2.8 711,537 - PfGW456L13_620 0.84 -1.2 711,537 - PfGW456L13_620 0.84 +1.6 711,537 - PfGW456L13_620 0.84 -2.8 711,537 - PfGW456L13_620 0.84 -0.5 711,537 - PfGW456L13_620 0.84 -0.9 711,537 - PfGW456L13_620 0.84 -1.7 711,537 - PfGW456L13_620 0.84 +2.2 711,537 - PfGW456L13_620 0.84 -0.2 711,597 + PfGW456L13_620 0.90 -2.5 711,597 + PfGW456L13_620 0.90 -2.7 711,598 - PfGW456L13_620 0.90 -1.2 711,698 + -0.1 711,698 + +0.0 711,699 - -0.6 711,725 - -0.3 711,805 + -3.6 711,805 + -2.8 711,805 + -1.3 711,805 + -1.1 711,806 - -1.1 711,806 - +0.0 711,806 - -0.8 711,806 - -1.2 711,854 + -1.1 711,874 - -0.7 711,876 - +2.1 711,925 - +1.9 711,953 - -3.1 712,085 + PfGW456L13_621 0.51 -3.7 712,085 + PfGW456L13_621 0.51 -0.7 712,188 + PfGW456L13_621 0.85 -2.0 712,189 - PfGW456L13_621 0.86 -0.9 712,208 + -3.3 712,209 - -2.5 712,209 - -4.1 712,209 - -1.3 712,209 - -2.7 712,209 - -0.3 712,216 + -3.7 712,261 + -1.1 712,262 - +0.9 712,262 - +0.5 712,345 - -0.7 712,345 - +0.2 712,345 - +1.2 712,345 - +0.1 712,348 + -0.5 712,349 - -0.0 712,349 - -3.7 712,382 - -0.6 712,386 - +0.9 712,394 - +2.3 712,396 + -1.9 712,397 - -2.3 712,397 - -0.1 712,475 + +0.5 712,477 + -0.0 712,547 + -2.7 712,612 + -3.6 712,630 + -0.9 712,635 + -0.7 712,635 + -3.2 712,636 - +1.1 712,641 + -1.9 712,719 + -1.5 712,719 + -2.0 712,719 + -4.4 712,721 + -2.3 712,722 - -2.3 712,742 + +0.1 712,743 - -1.1 712,808 + -2.6 712,809 - -3.8 712,809 - -2.6 712,809 - +0.6 712,861 + -1.8 712,861 + -0.7 712,861 + -0.4 712,861 + -2.5 712,861 + -0.3 712,861 + -2.4 712,862 - -0.7 712,862 - -1.8 712,864 - +1.0 712,994 + -1.6 712,995 - +0.1 713,003 + -1.9 713,003 + -3.8 713,003 + +1.7 713,003 + +0.6 713,003 + +1.5 713,003 + +0.8 713,003 + -0.1 713,003 + -2.2 713,004 - -0.3 713,004 - -1.3 713,004 - -2.7 713,004 - -1.4 713,004 - +1.6 713,004 - -2.3 713,093 + +1.0 713,093 + +1.8 713,094 - +0.6 713,094 - -0.3 713,094 - +1.0 713,094 - -1.5 713,104 + +1.3 713,104 + +0.7 713,104 + -1.9 713,104 + +0.7 713,104 + -0.2 713,104 + -3.3 713,104 + +1.3 713,104 + +0.8 713,104 + -4.0 713,104 + +0.7 713,104 + +0.9 713,104 + -2.3 713,105 - +1.1 713,105 - -1.5 713,105 - +0.5 713,105 - -2.4 713,105 - -2.1 713,105 - -0.6 713,105 - -3.3 713,105 - +1.1 713,105 - -2.3 713,105 - +1.4 713,105 - -0.3
Or see this region's nucleotide sequence