Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_556 and PfGW456L13_557 are separated by 11 nucleotides PfGW456L13_557 and PfGW456L13_558 overlap by 4 nucleotides PfGW456L13_558 and PfGW456L13_559 are separated by 213 nucleotides
PfGW456L13_556 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 653,684 to 654,805
_556
PfGW456L13_557 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 654,817 to 655,170
_557
PfGW456L13_558 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 655,167 to 656,603
_558
PfGW456L13_559 - Acetyl-CoA hydrolase (EC 3.1.2.1), at 656,817 to 658,310
_559
Position (kb) 655
656
657 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 655.323 kb on + strand, within PfGW456L13_558 at 655.323 kb on + strand, within PfGW456L13_558 at 655.323 kb on + strand, within PfGW456L13_558 at 655.356 kb on - strand, within PfGW456L13_558 at 655.363 kb on - strand, within PfGW456L13_558 at 655.974 kb on + strand, within PfGW456L13_558 at 656.601 kb on + strand at 656.672 kb on + strand at 656.673 kb on - strand at 656.723 kb on + strand at 656.775 kb on + strand at 656.776 kb on - strand at 656.792 kb on + strand at 656.793 kb on - strand at 656.793 kb on - strand at 656.800 kb on - strand at 656.808 kb on + strand at 656.808 kb on + strand at 656.809 kb on - strand at 656.809 kb on - strand at 656.820 kb on + strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 656.821 kb on - strand at 657.236 kb on + strand, within PfGW456L13_559 at 657.237 kb on - strand, within PfGW456L13_559 at 657.237 kb on - strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.351 kb on + strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.352 kb on - strand, within PfGW456L13_559 at 657.363 kb on + strand, within PfGW456L13_559 at 657.363 kb on + strand, within PfGW456L13_559 at 657.363 kb on + strand, within PfGW456L13_559 at 657.364 kb on - strand, within PfGW456L13_559 at 657.364 kb on - strand, within PfGW456L13_559 at 657.364 kb on - strand, within PfGW456L13_559 at 657.595 kb on + strand, within PfGW456L13_559
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 655,323 + PfGW456L13_558 0.11 -0.1 655,323 + PfGW456L13_558 0.11 +1.1 655,323 + PfGW456L13_558 0.11 +0.1 655,356 - PfGW456L13_558 0.13 +1.0 655,363 - PfGW456L13_558 0.14 -0.3 655,974 + PfGW456L13_558 0.56 -1.9 656,601 + +1.7 656,672 + -4.6 656,673 - +0.5 656,723 + -3.4 656,775 + +1.7 656,776 - +0.5 656,792 + -2.9 656,793 - -3.1 656,793 - +0.3 656,800 - -1.7 656,808 + -3.7 656,808 + +0.6 656,809 - +1.4 656,809 - -2.3 656,820 + +1.1 656,821 - +0.3 656,821 - -2.3 656,821 - +0.6 656,821 - -0.7 656,821 - -2.8 656,821 - -0.2 656,821 - +1.5 656,821 - -0.4 657,236 + PfGW456L13_559 0.28 +0.2 657,237 - PfGW456L13_559 0.28 +0.2 657,237 - PfGW456L13_559 0.28 +2.2 657,351 + PfGW456L13_559 0.36 +1.4 657,351 + PfGW456L13_559 0.36 -2.4 657,351 + PfGW456L13_559 0.36 +1.0 657,351 + PfGW456L13_559 0.36 +0.1 657,351 + PfGW456L13_559 0.36 -0.6 657,351 + PfGW456L13_559 0.36 -2.3 657,351 + PfGW456L13_559 0.36 +0.6 657,351 + PfGW456L13_559 0.36 +1.1 657,351 + PfGW456L13_559 0.36 +0.0 657,351 + PfGW456L13_559 0.36 -1.0 657,351 + PfGW456L13_559 0.36 -3.2 657,351 + PfGW456L13_559 0.36 +0.5 657,352 - PfGW456L13_559 0.36 +0.2 657,352 - PfGW456L13_559 0.36 -2.5 657,352 - PfGW456L13_559 0.36 +0.8 657,352 - PfGW456L13_559 0.36 -3.1 657,352 - PfGW456L13_559 0.36 +0.4 657,352 - PfGW456L13_559 0.36 -0.5 657,352 - PfGW456L13_559 0.36 +1.9 657,352 - PfGW456L13_559 0.36 +1.1 657,352 - PfGW456L13_559 0.36 -1.2 657,352 - PfGW456L13_559 0.36 +0.9 657,352 - PfGW456L13_559 0.36 +0.6 657,352 - PfGW456L13_559 0.36 +0.4 657,352 - PfGW456L13_559 0.36 +1.0 657,363 + PfGW456L13_559 0.37 -0.9 657,363 + PfGW456L13_559 0.37 -3.5 657,363 + PfGW456L13_559 0.37 +1.6 657,364 - PfGW456L13_559 0.37 -0.4 657,364 - PfGW456L13_559 0.37 -1.7 657,364 - PfGW456L13_559 0.37 +2.3 657,595 + PfGW456L13_559 0.52 +0.7
Or see this region's nucleotide sequence