Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_557

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_556 and PfGW456L13_557 are separated by 11 nucleotidesPfGW456L13_557 and PfGW456L13_558 overlap by 4 nucleotides PfGW456L13_556 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 653,684 to 654,805 _556 PfGW456L13_557 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 654,817 to 655,170 _557 PfGW456L13_558 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 655,167 to 656,603 _558 Position (kb) 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2at 654.122 kb on + strand, within PfGW456L13_556at 654.122 kb on + strand, within PfGW456L13_556at 654.122 kb on + strand, within PfGW456L13_556at 654.122 kb on + strand, within PfGW456L13_556at 655.323 kb on + strand, within PfGW456L13_558at 655.323 kb on + strand, within PfGW456L13_558at 655.323 kb on + strand, within PfGW456L13_558at 655.356 kb on - strand, within PfGW456L13_558at 655.363 kb on - strand, within PfGW456L13_558at 655.974 kb on + strand, within PfGW456L13_558

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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654,122 + PfGW456L13_556 0.39 +0.8
654,122 + PfGW456L13_556 0.39 +2.5
654,122 + PfGW456L13_556 0.39 -0.7
654,122 + PfGW456L13_556 0.39 -1.0
655,323 + PfGW456L13_558 0.11 -0.1
655,323 + PfGW456L13_558 0.11 +1.1
655,323 + PfGW456L13_558 0.11 +0.1
655,356 - PfGW456L13_558 0.13 +1.0
655,363 - PfGW456L13_558 0.14 -0.3
655,974 + PfGW456L13_558 0.56 -1.9

Or see this region's nucleotide sequence