Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_556

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_555 and PfGW456L13_556 are separated by 435 nucleotidesPfGW456L13_556 and PfGW456L13_557 are separated by 11 nucleotidesPfGW456L13_557 and PfGW456L13_558 overlap by 4 nucleotides PfGW456L13_555 - Glycine cleavage system transcriptional activator, at 652,349 to 653,248 _555 PfGW456L13_556 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 653,684 to 654,805 _556 PfGW456L13_557 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 654,817 to 655,170 _557 PfGW456L13_558 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 655,167 to 656,603 _558 Position (kb) 653 654 655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 652.784 kb on + strand, within PfGW456L13_555at 652.785 kb on - strand, within PfGW456L13_555at 652.785 kb on - strand, within PfGW456L13_555at 652.785 kb on - strand, within PfGW456L13_555at 652.940 kb on + strand, within PfGW456L13_555at 652.940 kb on + strand, within PfGW456L13_555at 652.941 kb on - strand, within PfGW456L13_555at 652.941 kb on - strand, within PfGW456L13_555at 653.013 kb on + strand, within PfGW456L13_555at 653.013 kb on + strand, within PfGW456L13_555at 653.013 kb on + strand, within PfGW456L13_555at 653.013 kb on + strand, within PfGW456L13_555at 653.013 kb on + strand, within PfGW456L13_555at 653.013 kb on + strand, within PfGW456L13_555at 653.014 kb on - strand, within PfGW456L13_555at 653.014 kb on - strand, within PfGW456L13_555at 653.014 kb on - strand, within PfGW456L13_555at 653.014 kb on - strand, within PfGW456L13_555at 653.014 kb on - strand, within PfGW456L13_555at 653.014 kb on - strand, within PfGW456L13_555at 653.014 kb on - strand, within PfGW456L13_555at 653.147 kb on + strand, within PfGW456L13_555at 653.147 kb on + strand, within PfGW456L13_555at 653.147 kb on + strand, within PfGW456L13_555at 653.147 kb on + strand, within PfGW456L13_555at 653.147 kb on + strand, within PfGW456L13_555at 653.147 kb on + strand, within PfGW456L13_555at 653.148 kb on - strand, within PfGW456L13_555at 653.148 kb on - strand, within PfGW456L13_555at 653.148 kb on - strand, within PfGW456L13_555at 653.148 kb on - strand, within PfGW456L13_555at 653.148 kb on - strand, within PfGW456L13_555at 653.148 kb on - strand, within PfGW456L13_555at 653.148 kb on - strand, within PfGW456L13_555at 653.148 kb on - strand, within PfGW456L13_555at 653.150 kb on + strand, within PfGW456L13_555at 653.150 kb on + strand, within PfGW456L13_555at 653.150 kb on + strand, within PfGW456L13_555at 653.150 kb on + strand, within PfGW456L13_555at 653.151 kb on - strand, within PfGW456L13_555at 653.151 kb on - strand, within PfGW456L13_555at 653.151 kb on - strand, within PfGW456L13_555at 653.190 kb on + strandat 653.190 kb on + strandat 653.190 kb on + strandat 653.191 kb on - strandat 653.215 kb on - strandat 653.215 kb on - strandat 653.225 kb on + strandat 653.226 kb on - strandat 653.226 kb on - strandat 653.231 kb on + strandat 653.231 kb on + strandat 653.231 kb on + strandat 653.231 kb on + strandat 653.231 kb on + strandat 653.231 kb on + strandat 653.231 kb on + strandat 653.231 kb on + strandat 653.231 kb on + strandat 653.232 kb on - strandat 653.232 kb on - strandat 653.232 kb on - strandat 653.232 kb on - strandat 653.232 kb on - strandat 653.238 kb on + strandat 653.256 kb on - strandat 653.256 kb on - strandat 653.256 kb on - strandat 653.256 kb on - strandat 653.296 kb on + strandat 653.302 kb on + strandat 653.302 kb on + strandat 653.302 kb on + strandat 653.302 kb on + strandat 653.303 kb on - strandat 653.303 kb on - strandat 653.303 kb on - strandat 653.303 kb on - strandat 653.304 kb on + strandat 653.304 kb on + strandat 653.304 kb on + strandat 653.304 kb on + strandat 653.304 kb on + strandat 653.304 kb on + strandat 653.304 kb on + strandat 653.304 kb on + strandat 653.305 kb on - strandat 653.305 kb on - strandat 653.308 kb on + strandat 653.308 kb on + strandat 653.308 kb on + strandat 653.308 kb on + strandat 653.308 kb on + strandat 653.308 kb on + strandat 653.309 kb on - strandat 653.309 kb on - strandat 653.309 kb on - strandat 653.309 kb on - strandat 653.309 kb on - strandat 653.346 kb on - strandat 653.346 kb on - strandat 653.388 kb on + strandat 653.389 kb on - strandat 653.389 kb on - strandat 653.428 kb on + strandat 653.520 kb on + strandat 653.521 kb on - strandat 653.521 kb on - strandat 653.525 kb on - strandat 653.544 kb on + strandat 653.544 kb on + strandat 653.544 kb on + strandat 653.655 kb on - strandat 653.662 kb on - strandat 653.662 kb on - strandat 653.662 kb on - strandat 653.662 kb on - strandat 654.122 kb on + strand, within PfGW456L13_556at 654.122 kb on + strand, within PfGW456L13_556at 654.122 kb on + strand, within PfGW456L13_556at 654.122 kb on + strand, within PfGW456L13_556at 655.323 kb on + strand, within PfGW456L13_558at 655.323 kb on + strand, within PfGW456L13_558at 655.323 kb on + strand, within PfGW456L13_558at 655.356 kb on - strand, within PfGW456L13_558at 655.363 kb on - strand, within PfGW456L13_558

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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652,784 + PfGW456L13_555 0.48 +1.2
652,785 - PfGW456L13_555 0.48 -0.3
652,785 - PfGW456L13_555 0.48 -1.9
652,785 - PfGW456L13_555 0.48 +1.0
652,940 + PfGW456L13_555 0.66 +1.6
652,940 + PfGW456L13_555 0.66 -1.8
652,941 - PfGW456L13_555 0.66 -3.9
652,941 - PfGW456L13_555 0.66 +0.6
653,013 + PfGW456L13_555 0.74 +1.3
653,013 + PfGW456L13_555 0.74 -2.2
653,013 + PfGW456L13_555 0.74 +1.2
653,013 + PfGW456L13_555 0.74 +1.4
653,013 + PfGW456L13_555 0.74 +0.6
653,013 + PfGW456L13_555 0.74 -0.2
653,014 - PfGW456L13_555 0.74 +0.6
653,014 - PfGW456L13_555 0.74 -0.1
653,014 - PfGW456L13_555 0.74 -2.6
653,014 - PfGW456L13_555 0.74 -3.8
653,014 - PfGW456L13_555 0.74 +0.7
653,014 - PfGW456L13_555 0.74 -3.8
653,014 - PfGW456L13_555 0.74 +1.0
653,147 + PfGW456L13_555 0.89 -1.8
653,147 + PfGW456L13_555 0.89 +0.8
653,147 + PfGW456L13_555 0.89 +1.4
653,147 + PfGW456L13_555 0.89 -0.9
653,147 + PfGW456L13_555 0.89 -0.9
653,147 + PfGW456L13_555 0.89 -1.1
653,148 - PfGW456L13_555 0.89 -1.5
653,148 - PfGW456L13_555 0.89 -1.5
653,148 - PfGW456L13_555 0.89 +1.5
653,148 - PfGW456L13_555 0.89 +0.5
653,148 - PfGW456L13_555 0.89 -2.5
653,148 - PfGW456L13_555 0.89 +3.6
653,148 - PfGW456L13_555 0.89 +0.5
653,148 - PfGW456L13_555 0.89 -0.7
653,150 + PfGW456L13_555 0.89 +0.2
653,150 + PfGW456L13_555 0.89 +0.7
653,150 + PfGW456L13_555 0.89 -2.6
653,150 + PfGW456L13_555 0.89 -2.6
653,151 - PfGW456L13_555 0.89 -0.2
653,151 - PfGW456L13_555 0.89 -1.9
653,151 - PfGW456L13_555 0.89 +0.0
653,190 + -0.8
653,190 + +1.6
653,190 + +0.6
653,191 - -4.2
653,215 - -0.2
653,215 - -1.3
653,225 + -4.2
653,226 - +0.7
653,226 - -1.7
653,231 + +0.2
653,231 + +1.9
653,231 + -1.6
653,231 + -2.2
653,231 + -3.0
653,231 + +1.2
653,231 + -1.9
653,231 + -1.0
653,231 + -0.2
653,232 - +2.7
653,232 - -2.6
653,232 - +0.5
653,232 - -3.5
653,232 - +0.2
653,238 + +1.1
653,256 - +1.9
653,256 - -0.3
653,256 - +0.5
653,256 - -3.1
653,296 + -1.1
653,302 + -1.8
653,302 + +2.0
653,302 + -3.4
653,302 + +2.2
653,303 - -0.5
653,303 - -0.9
653,303 - -2.1
653,303 - -0.5
653,304 + -0.8
653,304 + +0.8
653,304 + -0.5
653,304 + -1.1
653,304 + +1.1
653,304 + -0.8
653,304 + -0.7
653,304 + -0.1
653,305 - -3.2
653,305 - +0.0
653,308 + +0.3
653,308 + +0.4
653,308 + +1.2
653,308 + -1.8
653,308 + +0.6
653,308 + +1.0
653,309 - +1.8
653,309 - -2.4
653,309 - +0.4
653,309 - -1.6
653,309 - +0.7
653,346 - +0.3
653,346 - -2.1
653,388 + -0.3
653,389 - -1.1
653,389 - -2.7
653,428 + -1.1
653,520 + -1.9
653,521 - -1.0
653,521 - -0.7
653,525 - -3.0
653,544 + +0.4
653,544 + -2.1
653,544 + -2.1
653,655 - +1.1
653,662 - -1.5
653,662 - -2.0
653,662 - -0.3
653,662 - +0.8
654,122 + PfGW456L13_556 0.39 +0.8
654,122 + PfGW456L13_556 0.39 +2.5
654,122 + PfGW456L13_556 0.39 -0.7
654,122 + PfGW456L13_556 0.39 -1.0
655,323 + PfGW456L13_558 0.11 -0.1
655,323 + PfGW456L13_558 0.11 +1.1
655,323 + PfGW456L13_558 0.11 +0.1
655,356 - PfGW456L13_558 0.13 +1.0
655,363 - PfGW456L13_558 0.14 -0.3

Or see this region's nucleotide sequence