Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_555 and PfGW456L13_556 are separated by 435 nucleotides PfGW456L13_556 and PfGW456L13_557 are separated by 11 nucleotides PfGW456L13_557 and PfGW456L13_558 overlap by 4 nucleotides
PfGW456L13_555 - Glycine cleavage system transcriptional activator, at 652,349 to 653,248
_555
PfGW456L13_556 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 653,684 to 654,805
_556
PfGW456L13_557 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 654,817 to 655,170
_557
PfGW456L13_558 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 655,167 to 656,603
_558
Position (kb) 653
654
655 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 652.784 kb on + strand, within PfGW456L13_555 at 652.785 kb on - strand, within PfGW456L13_555 at 652.785 kb on - strand, within PfGW456L13_555 at 652.785 kb on - strand, within PfGW456L13_555 at 652.940 kb on + strand, within PfGW456L13_555 at 652.940 kb on + strand, within PfGW456L13_555 at 652.941 kb on - strand, within PfGW456L13_555 at 652.941 kb on - strand, within PfGW456L13_555 at 653.013 kb on + strand, within PfGW456L13_555 at 653.013 kb on + strand, within PfGW456L13_555 at 653.013 kb on + strand, within PfGW456L13_555 at 653.013 kb on + strand, within PfGW456L13_555 at 653.013 kb on + strand, within PfGW456L13_555 at 653.013 kb on + strand, within PfGW456L13_555 at 653.014 kb on - strand, within PfGW456L13_555 at 653.014 kb on - strand, within PfGW456L13_555 at 653.014 kb on - strand, within PfGW456L13_555 at 653.014 kb on - strand, within PfGW456L13_555 at 653.014 kb on - strand, within PfGW456L13_555 at 653.014 kb on - strand, within PfGW456L13_555 at 653.014 kb on - strand, within PfGW456L13_555 at 653.147 kb on + strand, within PfGW456L13_555 at 653.147 kb on + strand, within PfGW456L13_555 at 653.147 kb on + strand, within PfGW456L13_555 at 653.147 kb on + strand, within PfGW456L13_555 at 653.147 kb on + strand, within PfGW456L13_555 at 653.147 kb on + strand, within PfGW456L13_555 at 653.148 kb on - strand, within PfGW456L13_555 at 653.148 kb on - strand, within PfGW456L13_555 at 653.148 kb on - strand, within PfGW456L13_555 at 653.148 kb on - strand, within PfGW456L13_555 at 653.148 kb on - strand, within PfGW456L13_555 at 653.148 kb on - strand, within PfGW456L13_555 at 653.148 kb on - strand, within PfGW456L13_555 at 653.148 kb on - strand, within PfGW456L13_555 at 653.150 kb on + strand, within PfGW456L13_555 at 653.150 kb on + strand, within PfGW456L13_555 at 653.150 kb on + strand, within PfGW456L13_555 at 653.150 kb on + strand, within PfGW456L13_555 at 653.151 kb on - strand, within PfGW456L13_555 at 653.151 kb on - strand, within PfGW456L13_555 at 653.151 kb on - strand, within PfGW456L13_555 at 653.190 kb on + strand at 653.190 kb on + strand at 653.190 kb on + strand at 653.191 kb on - strand at 653.215 kb on - strand at 653.215 kb on - strand at 653.225 kb on + strand at 653.226 kb on - strand at 653.226 kb on - strand at 653.231 kb on + strand at 653.231 kb on + strand at 653.231 kb on + strand at 653.231 kb on + strand at 653.231 kb on + strand at 653.231 kb on + strand at 653.231 kb on + strand at 653.231 kb on + strand at 653.231 kb on + strand at 653.232 kb on - strand at 653.232 kb on - strand at 653.232 kb on - strand at 653.232 kb on - strand at 653.232 kb on - strand at 653.238 kb on + strand at 653.256 kb on - strand at 653.256 kb on - strand at 653.256 kb on - strand at 653.256 kb on - strand at 653.296 kb on + strand at 653.302 kb on + strand at 653.302 kb on + strand at 653.302 kb on + strand at 653.302 kb on + strand at 653.303 kb on - strand at 653.303 kb on - strand at 653.303 kb on - strand at 653.303 kb on - strand at 653.304 kb on + strand at 653.304 kb on + strand at 653.304 kb on + strand at 653.304 kb on + strand at 653.304 kb on + strand at 653.304 kb on + strand at 653.304 kb on + strand at 653.304 kb on + strand at 653.305 kb on - strand at 653.305 kb on - strand at 653.308 kb on + strand at 653.308 kb on + strand at 653.308 kb on + strand at 653.308 kb on + strand at 653.308 kb on + strand at 653.308 kb on + strand at 653.309 kb on - strand at 653.309 kb on - strand at 653.309 kb on - strand at 653.309 kb on - strand at 653.309 kb on - strand at 653.346 kb on - strand at 653.346 kb on - strand at 653.388 kb on + strand at 653.389 kb on - strand at 653.389 kb on - strand at 653.428 kb on + strand at 653.520 kb on + strand at 653.521 kb on - strand at 653.521 kb on - strand at 653.525 kb on - strand at 653.544 kb on + strand at 653.544 kb on + strand at 653.544 kb on + strand at 653.655 kb on - strand at 653.662 kb on - strand at 653.662 kb on - strand at 653.662 kb on - strand at 653.662 kb on - strand at 654.122 kb on + strand, within PfGW456L13_556 at 654.122 kb on + strand, within PfGW456L13_556 at 654.122 kb on + strand, within PfGW456L13_556 at 654.122 kb on + strand, within PfGW456L13_556 at 655.323 kb on + strand, within PfGW456L13_558 at 655.323 kb on + strand, within PfGW456L13_558 at 655.323 kb on + strand, within PfGW456L13_558 at 655.356 kb on - strand, within PfGW456L13_558 at 655.363 kb on - strand, within PfGW456L13_558
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 652,784 + PfGW456L13_555 0.48 +1.2 652,785 - PfGW456L13_555 0.48 -0.3 652,785 - PfGW456L13_555 0.48 -1.9 652,785 - PfGW456L13_555 0.48 +1.0 652,940 + PfGW456L13_555 0.66 +1.6 652,940 + PfGW456L13_555 0.66 -1.8 652,941 - PfGW456L13_555 0.66 -3.9 652,941 - PfGW456L13_555 0.66 +0.6 653,013 + PfGW456L13_555 0.74 +1.3 653,013 + PfGW456L13_555 0.74 -2.2 653,013 + PfGW456L13_555 0.74 +1.2 653,013 + PfGW456L13_555 0.74 +1.4 653,013 + PfGW456L13_555 0.74 +0.6 653,013 + PfGW456L13_555 0.74 -0.2 653,014 - PfGW456L13_555 0.74 +0.6 653,014 - PfGW456L13_555 0.74 -0.1 653,014 - PfGW456L13_555 0.74 -2.6 653,014 - PfGW456L13_555 0.74 -3.8 653,014 - PfGW456L13_555 0.74 +0.7 653,014 - PfGW456L13_555 0.74 -3.8 653,014 - PfGW456L13_555 0.74 +1.0 653,147 + PfGW456L13_555 0.89 -1.8 653,147 + PfGW456L13_555 0.89 +0.8 653,147 + PfGW456L13_555 0.89 +1.4 653,147 + PfGW456L13_555 0.89 -0.9 653,147 + PfGW456L13_555 0.89 -0.9 653,147 + PfGW456L13_555 0.89 -1.1 653,148 - PfGW456L13_555 0.89 -1.5 653,148 - PfGW456L13_555 0.89 -1.5 653,148 - PfGW456L13_555 0.89 +1.5 653,148 - PfGW456L13_555 0.89 +0.5 653,148 - PfGW456L13_555 0.89 -2.5 653,148 - PfGW456L13_555 0.89 +3.6 653,148 - PfGW456L13_555 0.89 +0.5 653,148 - PfGW456L13_555 0.89 -0.7 653,150 + PfGW456L13_555 0.89 +0.2 653,150 + PfGW456L13_555 0.89 +0.7 653,150 + PfGW456L13_555 0.89 -2.6 653,150 + PfGW456L13_555 0.89 -2.6 653,151 - PfGW456L13_555 0.89 -0.2 653,151 - PfGW456L13_555 0.89 -1.9 653,151 - PfGW456L13_555 0.89 +0.0 653,190 + -0.8 653,190 + +1.6 653,190 + +0.6 653,191 - -4.2 653,215 - -0.2 653,215 - -1.3 653,225 + -4.2 653,226 - +0.7 653,226 - -1.7 653,231 + +0.2 653,231 + +1.9 653,231 + -1.6 653,231 + -2.2 653,231 + -3.0 653,231 + +1.2 653,231 + -1.9 653,231 + -1.0 653,231 + -0.2 653,232 - +2.7 653,232 - -2.6 653,232 - +0.5 653,232 - -3.5 653,232 - +0.2 653,238 + +1.1 653,256 - +1.9 653,256 - -0.3 653,256 - +0.5 653,256 - -3.1 653,296 + -1.1 653,302 + -1.8 653,302 + +2.0 653,302 + -3.4 653,302 + +2.2 653,303 - -0.5 653,303 - -0.9 653,303 - -2.1 653,303 - -0.5 653,304 + -0.8 653,304 + +0.8 653,304 + -0.5 653,304 + -1.1 653,304 + +1.1 653,304 + -0.8 653,304 + -0.7 653,304 + -0.1 653,305 - -3.2 653,305 - +0.0 653,308 + +0.3 653,308 + +0.4 653,308 + +1.2 653,308 + -1.8 653,308 + +0.6 653,308 + +1.0 653,309 - +1.8 653,309 - -2.4 653,309 - +0.4 653,309 - -1.6 653,309 - +0.7 653,346 - +0.3 653,346 - -2.1 653,388 + -0.3 653,389 - -1.1 653,389 - -2.7 653,428 + -1.1 653,520 + -1.9 653,521 - -1.0 653,521 - -0.7 653,525 - -3.0 653,544 + +0.4 653,544 + -2.1 653,544 + -2.1 653,655 - +1.1 653,662 - -1.5 653,662 - -2.0 653,662 - -0.3 653,662 - +0.8 654,122 + PfGW456L13_556 0.39 +0.8 654,122 + PfGW456L13_556 0.39 +2.5 654,122 + PfGW456L13_556 0.39 -0.7 654,122 + PfGW456L13_556 0.39 -1.0 655,323 + PfGW456L13_558 0.11 -0.1 655,323 + PfGW456L13_558 0.11 +1.1 655,323 + PfGW456L13_558 0.11 +0.1 655,356 - PfGW456L13_558 0.13 +1.0 655,363 - PfGW456L13_558 0.14 -0.3
Or see this region's nucleotide sequence