Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5091

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5090 and PfGW456L13_5242 are separated by 141 nucleotidesPfGW456L13_5242 and PfGW456L13_5243 are separated by 100 nucleotidesPfGW456L13_5243 and PfGW456L13_5091 are separated by 410 nucleotidesPfGW456L13_5091 and PfGW456L13_5092 are separated by 78 nucleotides PfGW456L13_5090 - FIG000325: clustered with transcription termination protein NusA, at 5,679,411 to 5,679,869 _5090 PfGW456L13_5242 - tRNA-Met-CAT, at 5,680,011 to 5,680,084 _5242 PfGW456L13_5243 - tRNA-Leu-GAG, at 5,680,185 to 5,680,267 _5243 PfGW456L13_5091 - Triosephosphate isomerase (EC 5.3.1.1), at 5,680,678 to 5,681,421 _5091 PfGW456L13_5092 - Phosphoglucosamine mutase (EC 5.4.2.10), at 5,681,500 to 5,682,837 _5092 Position (kb) 5680 5681 5682Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.890 kb on - strandat 5679.901 kb on - strandat 5679.901 kb on - strandat 5679.990 kb on - strandat 5680.004 kb on - strandat 5680.048 kb on - strand, within PfGW456L13_5242at 5680.106 kb on - strandat 5680.271 kb on - strandat 5680.274 kb on - strandat 5680.274 kb on - strandat 5680.292 kb on - strandat 5680.292 kb on - strandat 5680.292 kb on - strandat 5680.292 kb on - strandat 5680.292 kb on - strandat 5680.292 kb on - strandat 5681.439 kb on - strandat 5681.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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5,679,890 - +0.1
5,679,890 - +0.1
5,679,890 - +1.2
5,679,890 - -0.8
5,679,890 - -1.2
5,679,890 - -0.4
5,679,890 - +1.9
5,679,890 - -0.8
5,679,890 - -2.0
5,679,890 - +0.3
5,679,890 - +1.7
5,679,890 - -0.5
5,679,890 - -3.0
5,679,890 - +0.7
5,679,890 - -2.5
5,679,890 - +0.7
5,679,890 - +0.1
5,679,890 - +0.9
5,679,890 - +1.5
5,679,890 - -0.9
5,679,890 - -2.1
5,679,890 - -0.7
5,679,890 - -1.6
5,679,890 - +0.3
5,679,890 - -0.2
5,679,890 - -2.2
5,679,890 - +0.1
5,679,890 - -0.7
5,679,890 - -3.4
5,679,890 - -3.9
5,679,890 - +0.1
5,679,890 - +0.6
5,679,890 - -0.1
5,679,890 - -3.8
5,679,890 - -1.5
5,679,901 - -2.0
5,679,901 - -2.0
5,679,990 - -3.8
5,680,004 - -2.2
5,680,048 - PfGW456L13_5242 0.50 -3.2
5,680,106 - -2.7
5,680,271 - -3.0
5,680,274 - +1.7
5,680,274 - +0.3
5,680,292 - -0.7
5,680,292 - -0.7
5,680,292 - -3.5
5,680,292 - -2.8
5,680,292 - -3.9
5,680,292 - -0.2
5,681,439 - -4.0
5,681,439 - +0.1

Or see this region's nucleotide sequence