Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4741 and PfGW456L13_4742 are separated by 315 nucleotides PfGW456L13_4742 and PfGW456L13_4743 are separated by 45 nucleotides PfGW456L13_4743 and PfGW456L13_4744 are separated by 138 nucleotides PfGW456L13_4744 and PfGW456L13_4745 overlap by 4 nucleotides
PfGW456L13_4741 - FIG00958830: hypothetical protein, at 5,285,257 to 5,285,601
_4741
PfGW456L13_4742 - FIG00953405: hypothetical protein, at 5,285,917 to 5,286,330
_4742
PfGW456L13_4743 - Outer membrane lipoprotein omp16 precursor, at 5,286,376 to 5,287,173
_4743
PfGW456L13_4744 - Putative lipoprotein in cluster with COG2110, at 5,287,312 to 5,287,641
_4744
PfGW456L13_4745 - Hydrolase of the alpha/beta superfamily in cluster with COG2110, at 5,287,638 to 5,288,552
_4745
Position (kb) 5286
5287
5288 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5285.381 kb on - strand, within PfGW456L13_4741 at 5285.381 kb on - strand, within PfGW456L13_4741 at 5285.381 kb on - strand, within PfGW456L13_4741 at 5285.381 kb on - strand, within PfGW456L13_4741 at 5285.381 kb on - strand, within PfGW456L13_4741 at 5285.381 kb on - strand, within PfGW456L13_4741 at 5285.458 kb on + strand, within PfGW456L13_4741 at 5285.605 kb on - strand at 5285.605 kb on - strand at 5285.605 kb on - strand at 5285.623 kb on + strand at 5285.624 kb on - strand at 5285.624 kb on - strand at 5285.624 kb on - strand at 5285.624 kb on - strand at 5285.624 kb on - strand at 5285.679 kb on + strand at 5285.691 kb on - strand at 5285.691 kb on - strand at 5285.728 kb on - strand at 5285.728 kb on - strand at 5285.728 kb on - strand at 5285.728 kb on - strand at 5285.736 kb on + strand at 5285.736 kb on + strand at 5285.736 kb on + strand at 5285.778 kb on - strand at 5285.778 kb on - strand at 5285.778 kb on - strand at 5285.820 kb on + strand at 5285.820 kb on + strand at 5285.821 kb on - strand at 5285.821 kb on - strand at 5285.821 kb on - strand at 5286.178 kb on + strand, within PfGW456L13_4742 at 5286.178 kb on + strand, within PfGW456L13_4742 at 5286.178 kb on + strand, within PfGW456L13_4742 at 5286.328 kb on + strand at 5286.481 kb on + strand, within PfGW456L13_4743 at 5286.481 kb on + strand, within PfGW456L13_4743 at 5286.574 kb on + strand, within PfGW456L13_4743 at 5286.575 kb on - strand, within PfGW456L13_4743 at 5286.575 kb on - strand, within PfGW456L13_4743 at 5286.575 kb on - strand, within PfGW456L13_4743 at 5286.616 kb on + strand, within PfGW456L13_4743 at 5286.617 kb on - strand, within PfGW456L13_4743 at 5286.617 kb on - strand, within PfGW456L13_4743 at 5286.617 kb on - strand, within PfGW456L13_4743 at 5286.877 kb on + strand, within PfGW456L13_4743 at 5286.877 kb on + strand, within PfGW456L13_4743 at 5286.877 kb on + strand, within PfGW456L13_4743 at 5286.877 kb on + strand, within PfGW456L13_4743 at 5286.878 kb on - strand, within PfGW456L13_4743 at 5286.878 kb on - strand, within PfGW456L13_4743 at 5286.878 kb on - strand, within PfGW456L13_4743 at 5286.882 kb on - strand, within PfGW456L13_4743 at 5286.882 kb on - strand, within PfGW456L13_4743 at 5286.919 kb on + strand, within PfGW456L13_4743 at 5286.919 kb on + strand, within PfGW456L13_4743 at 5287.023 kb on + strand, within PfGW456L13_4743 at 5287.051 kb on + strand, within PfGW456L13_4743 at 5287.126 kb on - strand at 5287.156 kb on - strand at 5287.162 kb on + strand at 5287.162 kb on + strand at 5287.162 kb on + strand at 5287.162 kb on + strand at 5287.163 kb on - strand at 5287.163 kb on - strand at 5287.163 kb on - strand at 5287.163 kb on - strand at 5287.163 kb on - strand at 5287.171 kb on + strand at 5287.224 kb on + strand at 5287.224 kb on + strand at 5287.225 kb on - strand at 5287.250 kb on + strand at 5287.250 kb on + strand at 5287.250 kb on + strand at 5287.250 kb on + strand at 5287.250 kb on + strand at 5287.250 kb on + strand at 5287.251 kb on - strand at 5287.251 kb on - strand at 5287.251 kb on - strand at 5287.292 kb on + strand at 5287.292 kb on + strand at 5287.293 kb on - strand at 5287.293 kb on - strand at 5287.313 kb on + strand at 5287.475 kb on + strand, within PfGW456L13_4744 at 5287.475 kb on + strand, within PfGW456L13_4744 at 5287.475 kb on + strand, within PfGW456L13_4744 at 5287.475 kb on + strand, within PfGW456L13_4744 at 5287.476 kb on - strand, within PfGW456L13_4744 at 5287.476 kb on - strand, within PfGW456L13_4744 at 5287.476 kb on - strand, within PfGW456L13_4744 at 5287.476 kb on - strand, within PfGW456L13_4744 at 5287.476 kb on - strand, within PfGW456L13_4744 at 5287.554 kb on - strand, within PfGW456L13_4744 at 5287.554 kb on - strand, within PfGW456L13_4744 at 5287.744 kb on + strand, within PfGW456L13_4745 at 5287.745 kb on - strand, within PfGW456L13_4745 at 5287.840 kb on + strand, within PfGW456L13_4745 at 5287.841 kb on - strand, within PfGW456L13_4745 at 5287.841 kb on - strand, within PfGW456L13_4745 at 5287.841 kb on - strand, within PfGW456L13_4745 at 5287.841 kb on - strand, within PfGW456L13_4745 at 5287.841 kb on - strand, within PfGW456L13_4745 at 5287.841 kb on - strand, within PfGW456L13_4745 at 5287.891 kb on + strand, within PfGW456L13_4745 at 5287.891 kb on + strand, within PfGW456L13_4745 at 5287.891 kb on + strand, within PfGW456L13_4745 at 5287.892 kb on - strand, within PfGW456L13_4745 at 5287.892 kb on - strand, within PfGW456L13_4745 at 5288.000 kb on + strand, within PfGW456L13_4745 at 5288.001 kb on - strand, within PfGW456L13_4745 at 5288.011 kb on + strand, within PfGW456L13_4745 at 5288.098 kb on + strand, within PfGW456L13_4745 at 5288.099 kb on - strand, within PfGW456L13_4745 at 5288.099 kb on - strand, within PfGW456L13_4745
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 5,285,381 - PfGW456L13_4741 0.36 -0.4 5,285,381 - PfGW456L13_4741 0.36 -2.1 5,285,381 - PfGW456L13_4741 0.36 -2.5 5,285,381 - PfGW456L13_4741 0.36 +0.3 5,285,381 - PfGW456L13_4741 0.36 -1.4 5,285,381 - PfGW456L13_4741 0.36 -0.8 5,285,458 + PfGW456L13_4741 0.58 +0.3 5,285,605 - -2.0 5,285,605 - -1.6 5,285,605 - +1.5 5,285,623 + +0.5 5,285,624 - +0.3 5,285,624 - -2.4 5,285,624 - -0.7 5,285,624 - -0.2 5,285,624 - -3.1 5,285,679 + +1.1 5,285,691 - +1.7 5,285,691 - +1.5 5,285,728 - -1.6 5,285,728 - -3.1 5,285,728 - +2.0 5,285,728 - -1.4 5,285,736 + +0.8 5,285,736 + -0.6 5,285,736 + -3.4 5,285,778 - -2.2 5,285,778 - -2.7 5,285,778 - -3.0 5,285,820 + +1.4 5,285,820 + +0.3 5,285,821 - -0.7 5,285,821 - -2.0 5,285,821 - +0.7 5,286,178 + PfGW456L13_4742 0.63 +1.2 5,286,178 + PfGW456L13_4742 0.63 -2.7 5,286,178 + PfGW456L13_4742 0.63 +0.8 5,286,328 + +0.5 5,286,481 + PfGW456L13_4743 0.13 -3.9 5,286,481 + PfGW456L13_4743 0.13 +0.9 5,286,574 + PfGW456L13_4743 0.25 +0.2 5,286,575 - PfGW456L13_4743 0.25 +1.6 5,286,575 - PfGW456L13_4743 0.25 +0.1 5,286,575 - PfGW456L13_4743 0.25 +1.4 5,286,616 + PfGW456L13_4743 0.30 -0.5 5,286,617 - PfGW456L13_4743 0.30 +0.5 5,286,617 - PfGW456L13_4743 0.30 +0.8 5,286,617 - PfGW456L13_4743 0.30 -0.1 5,286,877 + PfGW456L13_4743 0.63 -0.6 5,286,877 + PfGW456L13_4743 0.63 +1.8 5,286,877 + PfGW456L13_4743 0.63 +2.1 5,286,877 + PfGW456L13_4743 0.63 +0.5 5,286,878 - PfGW456L13_4743 0.63 +0.6 5,286,878 - PfGW456L13_4743 0.63 +1.8 5,286,878 - PfGW456L13_4743 0.63 +0.4 5,286,882 - PfGW456L13_4743 0.63 +2.0 5,286,882 - PfGW456L13_4743 0.63 +0.5 5,286,919 + PfGW456L13_4743 0.68 +1.0 5,286,919 + PfGW456L13_4743 0.68 -0.9 5,287,023 + PfGW456L13_4743 0.81 -4.0 5,287,051 + PfGW456L13_4743 0.85 -1.1 5,287,126 - +0.1 5,287,156 - +2.6 5,287,162 + +1.2 5,287,162 + +1.5 5,287,162 + +0.7 5,287,162 + +0.9 5,287,163 - +0.0 5,287,163 - -0.3 5,287,163 - -0.2 5,287,163 - -2.5 5,287,163 - -1.2 5,287,171 + -0.2 5,287,224 + +1.2 5,287,224 + -2.1 5,287,225 - +0.5 5,287,250 + -2.1 5,287,250 + +0.5 5,287,250 + -1.8 5,287,250 + +0.6 5,287,250 + +1.0 5,287,250 + +0.9 5,287,251 - -0.8 5,287,251 - -0.8 5,287,251 - -0.0 5,287,292 + -0.3 5,287,292 + -0.6 5,287,293 - +0.8 5,287,293 - -2.4 5,287,313 + -0.3 5,287,475 + PfGW456L13_4744 0.49 -3.6 5,287,475 + PfGW456L13_4744 0.49 -3.2 5,287,475 + PfGW456L13_4744 0.49 -0.8 5,287,475 + PfGW456L13_4744 0.49 +2.6 5,287,476 - PfGW456L13_4744 0.50 -2.9 5,287,476 - PfGW456L13_4744 0.50 +0.3 5,287,476 - PfGW456L13_4744 0.50 +0.6 5,287,476 - PfGW456L13_4744 0.50 +1.4 5,287,476 - PfGW456L13_4744 0.50 +0.2 5,287,554 - PfGW456L13_4744 0.73 -3.0 5,287,554 - PfGW456L13_4744 0.73 -0.3 5,287,744 + PfGW456L13_4745 0.12 +2.0 5,287,745 - PfGW456L13_4745 0.12 +0.7 5,287,840 + PfGW456L13_4745 0.22 -0.3 5,287,841 - PfGW456L13_4745 0.22 -1.8 5,287,841 - PfGW456L13_4745 0.22 +1.7 5,287,841 - PfGW456L13_4745 0.22 -2.9 5,287,841 - PfGW456L13_4745 0.22 +0.8 5,287,841 - PfGW456L13_4745 0.22 -3.0 5,287,841 - PfGW456L13_4745 0.22 +0.5 5,287,891 + PfGW456L13_4745 0.28 +0.1 5,287,891 + PfGW456L13_4745 0.28 -0.4 5,287,891 + PfGW456L13_4745 0.28 -2.9 5,287,892 - PfGW456L13_4745 0.28 +0.4 5,287,892 - PfGW456L13_4745 0.28 +0.4 5,288,000 + PfGW456L13_4745 0.40 +0.6 5,288,001 - PfGW456L13_4745 0.40 +0.7 5,288,011 + PfGW456L13_4745 0.41 -0.1 5,288,098 + PfGW456L13_4745 0.50 +0.5 5,288,099 - PfGW456L13_4745 0.50 -0.5 5,288,099 - PfGW456L13_4745 0.50 +0.6
Or see this region's nucleotide sequence