Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4513 and PfGW456L13_4514 are separated by 178 nucleotides PfGW456L13_4514 and PfGW456L13_4515 are separated by 8 nucleotides PfGW456L13_4515 and PfGW456L13_4516 are separated by 31 nucleotides
PfGW456L13_4513 - HtrA protease/chaperone protein, at 5,045,585 to 5,047,009
_4513
PfGW456L13_4514 - Sigma factor RpoE negative regulatory protein RseB precursor, at 5,047,188 to 5,048,147
_4514
PfGW456L13_4515 - Sigma factor RpoE negative regulatory protein RseA, at 5,048,156 to 5,048,743
_4515
PfGW456L13_4516 - RNA polymerase sigma-H factor AlgT, at 5,048,775 to 5,049,356
_4516
Position (kb) 5047
5048
5049 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5047.070 kb on - strand at 5047.245 kb on - strand at 5047.254 kb on + strand at 5047.338 kb on - strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.418 kb on + strand, within PfGW456L13_4514 at 5047.565 kb on + strand, within PfGW456L13_4514 at 5047.566 kb on - strand, within PfGW456L13_4514 at 5047.796 kb on - strand, within PfGW456L13_4514 at 5047.982 kb on + strand, within PfGW456L13_4514 at 5047.983 kb on - strand, within PfGW456L13_4514 at 5047.998 kb on - strand, within PfGW456L13_4514 at 5048.003 kb on + strand, within PfGW456L13_4514 at 5048.012 kb on - strand, within PfGW456L13_4514 at 5048.021 kb on + strand, within PfGW456L13_4514 at 5048.021 kb on + strand, within PfGW456L13_4514 at 5048.022 kb on - strand, within PfGW456L13_4514 at 5048.130 kb on + strand at 5048.137 kb on - strand at 5048.137 kb on - strand at 5048.137 kb on - strand at 5048.431 kb on - strand, within PfGW456L13_4515 at 5048.777 kb on - strand at 5048.888 kb on - strand, within PfGW456L13_4516 at 5048.888 kb on - strand, within PfGW456L13_4516 at 5048.888 kb on - strand, within PfGW456L13_4516 at 5048.910 kb on + strand, within PfGW456L13_4516 at 5048.911 kb on - strand, within PfGW456L13_4516 at 5048.911 kb on - strand, within PfGW456L13_4516 at 5048.911 kb on - strand, within PfGW456L13_4516 at 5048.916 kb on + strand, within PfGW456L13_4516 at 5049.037 kb on + strand, within PfGW456L13_4516 at 5049.038 kb on - strand, within PfGW456L13_4516 at 5049.038 kb on - strand at 5049.038 kb on - strand, within PfGW456L13_4516 at 5049.038 kb on - strand, within PfGW456L13_4516 at 5049.038 kb on - strand, within PfGW456L13_4516 at 5049.140 kb on + strand, within PfGW456L13_4516 at 5049.141 kb on - strand, within PfGW456L13_4516 at 5049.141 kb on - strand, within PfGW456L13_4516 at 5049.143 kb on - strand, within PfGW456L13_4516 at 5049.143 kb on - strand, within PfGW456L13_4516 at 5049.143 kb on - strand, within PfGW456L13_4516
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 5,047,070 - -1.6 5,047,245 - -3.6 5,047,254 + -1.3 5,047,338 - PfGW456L13_4514 0.16 -1.4 5,047,408 + PfGW456L13_4514 0.23 -2.4 5,047,408 + PfGW456L13_4514 0.23 -0.7 5,047,408 + PfGW456L13_4514 0.23 -0.8 5,047,408 + PfGW456L13_4514 0.23 -1.0 5,047,408 + PfGW456L13_4514 0.23 +0.0 5,047,409 - PfGW456L13_4514 0.23 -0.6 5,047,409 - PfGW456L13_4514 0.23 -1.0 5,047,409 - PfGW456L13_4514 0.23 +0.0 5,047,409 - PfGW456L13_4514 0.23 -0.9 5,047,409 - PfGW456L13_4514 0.23 -1.6 5,047,418 + PfGW456L13_4514 0.24 -2.4 5,047,565 + PfGW456L13_4514 0.39 -2.9 5,047,566 - PfGW456L13_4514 0.39 -1.4 5,047,796 - PfGW456L13_4514 0.63 -1.1 5,047,982 + PfGW456L13_4514 0.83 +0.2 5,047,983 - PfGW456L13_4514 0.83 -0.8 5,047,998 - PfGW456L13_4514 0.84 -1.0 5,048,003 + PfGW456L13_4514 0.85 +0.4 5,048,012 - PfGW456L13_4514 0.86 -3.2 5,048,021 + PfGW456L13_4514 0.87 +1.4 5,048,021 + PfGW456L13_4514 0.87 -1.2 5,048,022 - PfGW456L13_4514 0.87 -1.3 5,048,130 + -1.0 5,048,137 - -2.6 5,048,137 - -0.6 5,048,137 - -0.7 5,048,431 - PfGW456L13_4515 0.47 -1.3 5,048,777 - +1.0 5,048,888 - PfGW456L13_4516 0.19 +3.3 5,048,888 - PfGW456L13_4516 0.19 +1.2 5,048,888 - PfGW456L13_4516 0.19 +1.2 5,048,910 + PfGW456L13_4516 0.23 +2.6 5,048,911 - PfGW456L13_4516 0.23 -2.7 5,048,911 - PfGW456L13_4516 0.23 +1.6 5,048,911 - PfGW456L13_4516 0.23 +2.0 5,048,916 + PfGW456L13_4516 0.24 +1.3 5,049,037 + PfGW456L13_4516 0.45 +2.6 5,049,038 - PfGW456L13_4516 0.45 +0.8 5,049,038 - +3.8 5,049,038 - PfGW456L13_4516 0.45 +1.7 5,049,038 - PfGW456L13_4516 0.45 +0.7 5,049,038 - PfGW456L13_4516 0.45 -0.2 5,049,140 + PfGW456L13_4516 0.63 -2.9 5,049,141 - PfGW456L13_4516 0.63 +2.5 5,049,141 - PfGW456L13_4516 0.63 +2.3 5,049,143 - PfGW456L13_4516 0.63 -4.4 5,049,143 - PfGW456L13_4516 0.63 +2.6 5,049,143 - PfGW456L13_4516 0.63 +1.3
Or see this region's nucleotide sequence